Variant report

Variant	rs187609077
Chromosome Location	chr4:16522282-16522283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv593780	chr4:16519719-16557143	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1005782	chr4:16521109-16554088	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv537049	chr4:16521109-16554088	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16511800-16522400	Weak transcription	Placenta	Placenta
2	chr4:16511800-16526600	Weak transcription	Fetal Stomach	stomach
3	chr4:16513400-16526600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:16513800-16525800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:16513800-16530400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:16516200-16523400	Weak transcription	HUVEC	blood vessel
7	chr4:16519200-16525600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:16519400-16525400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:16519400-16525800	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:16519600-16524600	Weak transcription	Brain Substantia Nigra	brain
11	chr4:16519800-16525600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:16519800-16525600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:16520000-16525800	Weak transcription	Fetal Brain Female	brain
14	chr4:16521400-16523000	Enhancers	Ovary	ovary
15	chr4:16521600-16522400	Enhancers	Fetal Brain Male	brain
16	chr4:16522000-16523200	Enhancers	Fetal Lung	lung
17	chr4:16522200-16522800	Enhancers	Lung	lung
18	chr4:16522200-16522800	Enhancers	Spleen	Spleen
19	chr4:16522200-16523000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:16522200-16523000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:16522200-16523000	Enhancers	Fetal Muscle Trunk	muscle
22	chr4:16522200-16523000	Enhancers	Left Ventricle	heart
23	chr4:16522200-16523000	Enhancers	Right Atrium	heart
24	chr4:16522200-16523200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links