Variant report

Variant	rs1876372
Chromosome Location	chr6:25442464-25442465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25441775..25443784-chr6:25446785..25449168,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10498725	0.82[JPT][hapmap]
rs12153885	0.88[ASN][1000 genomes]
rs12195837	0.92[ASN][1000 genomes]
rs12200019	0.85[ASN][1000 genomes]
rs1304166	0.81[ASN][1000 genomes]
rs1876373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076890	0.88[ASN][1000 genomes]
rs485567	1.00[CHB][hapmap]
rs6905021	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72831248	0.88[ASN][1000 genomes]
rs72831254	0.81[ASN][1000 genomes]
rs7449710	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760659	0.92[ASN][1000 genomes]
rs912449	1.00[JPT][hapmap]
rs9461170	0.82[JPT][hapmap]
rs9461171	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467516	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25411000-25451800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:25415000-25446200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:25416200-25447800	Weak transcription	Pancreas	Pancrea
4	chr6:25416600-25447800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:25418800-25462600	Weak transcription	Ovary	ovary
6	chr6:25420800-25445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:25421400-25446200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:25421600-25446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:25427000-25444400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:25432400-25445800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:25432400-25447800	Weak transcription	Gastric	stomach
12	chr6:25432600-25445400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:25433400-25472600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:25433600-25442600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:25434000-25446200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:25434200-25450200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:25435800-25447800	Weak transcription	Lung	lung
18	chr6:25436000-25443000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:25436000-25445400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:25436200-25481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:25436800-25443000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:25437000-25445800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:25437400-25445800	Weak transcription	Fetal Intestine Small	intestine
24	chr6:25438200-25472600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:25438400-25446400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:25438800-25442600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:25440000-25446200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:25440000-25447800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:25440400-25443600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:25440400-25443600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:25440400-25443800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr6:25440600-25446800	Weak transcription	NHEK	skin
33	chr6:25441000-25443200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:25441000-25443400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:25441000-25443800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:25441200-25442600	Enhancers	Thymus	Thymus
37	chr6:25441200-25443400	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:25441600-25442600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:25441600-25443800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:25441800-25442800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr6:25441800-25442800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:25441800-25442800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:25441800-25443600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr6:25441800-25443800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr6:25442000-25442600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:25442000-25455600	Weak transcription	Aorta	Aorta
47	chr6:25442200-25442600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:25442200-25442600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:25442200-25442600	Enhancers	Primary T cells from cord blood	blood
50	chr6:25442200-25443200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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