Variant report

Variant	rs1876387
Chromosome Location	chr6:79650591-79650592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79650100..79651603-chr6:79654723..79657145,2	K562	blood:
2	chr6:79647755..79649635-chr6:79649831..79651626,2	K562	blood:
3	chr6:79647356..79649255-chr6:79650126..79652701,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6454094	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3362036	chr6:79646533-79650631	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:79642400-79653000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:79642600-79658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:79643200-79653000	Weak transcription	HMEC	breast
5	chr6:79643600-79651600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:79644000-79658600	Strong transcription	Dnd41	blood
7	chr6:79644400-79651600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:79644600-79654000	Weak transcription	Brain Substantia Nigra	brain
9	chr6:79644800-79655400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:79645000-79657400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:79645600-79653200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:79645600-79658200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:79645600-79658600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:79646000-79652200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:79646000-79658000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:79646000-79658400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:79646200-79651200	Strong transcription	HSMM	muscle
18	chr6:79646200-79658200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:79646200-79658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:79646200-79659000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:79646400-79658200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:79646400-79658400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:79646600-79658000	Strong transcription	Liver	Liver
24	chr6:79647200-79658200	Strong transcription	Placenta	Placenta
25	chr6:79647600-79653000	Weak transcription	A549	lung
26	chr6:79647600-79654800	Weak transcription	Brain Germinal Matrix	brain
27	chr6:79648000-79652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:79648000-79657400	Strong transcription	HUVEC	blood vessel
29	chr6:79648000-79658200	Weak transcription	Esophagus	oesophagus
30	chr6:79648000-79658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:79648000-79660600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:79648000-79681200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:79648200-79650600	Weak transcription	Hela-S3	cervix
34	chr6:79648200-79652200	Weak transcription	Fetal Heart	heart
35	chr6:79648200-79655000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:79648200-79655000	Weak transcription	Thymus	Thymus
37	chr6:79648200-79658200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:79648800-79650600	Weak transcription	NHEK	skin
39	chr6:79648800-79651400	Strong transcription	Fetal Kidney	kidney
40	chr6:79648800-79651800	Strong transcription	NHDF-Ad	bronchial
41	chr6:79648800-79652600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:79648800-79655400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:79648800-79655400	Weak transcription	Lung	lung
44	chr6:79648800-79657600	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr6:79648800-79658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:79648800-79658200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr6:79648800-79658200	Weak transcription	Fetal Stomach	stomach
48	chr6:79648800-79658400	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:79648800-79658400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:79648800-79658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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