Variant report

Variant	rs187665178
Chromosome Location	chr7:86834974-86834975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TRIM28	chr7:86834892-86835397	K562	blood:	n/a	n/a
2	CBX3	chr7:86834906-86835426	K562	blood:	n/a	n/a
3	CBX3	chr7:86834949-86835445	K562	blood:	n/a	n/a
4	SETDB1	chr7:86834169-86835375	U2OS	brain:	n/a	n/a
5	SETDB1	chr7:86833818-86836465	K562	blood:	n/a	chr7:86835729-86835753
6	KAP1	chr7:86834110-86835257	K562	blood:	n/a	n/a

Variant related genes	Relation type
TMEM243	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv888676	chr7:86781423-86858824	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv1026193	chr7:86790391-86856448	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv539003	chr7:86790391-86856448	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
10	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
11	nsv511977	chr7:86834623-86837232	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86821000-86847400	Weak transcription	Stomach Mucosa	stomach
2	chr7:86822200-86841800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:86825000-86840000	Weak transcription	Ovary	ovary
4	chr7:86825600-86847400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:86825800-86843600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:86826600-86835000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:86826800-86846000	Weak transcription	Fetal Kidney	kidney
8	chr7:86826800-86848200	Weak transcription	Left Ventricle	heart
9	chr7:86828400-86848200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:86829000-86837600	Weak transcription	Fetal Heart	heart
11	chr7:86829800-86848000	Weak transcription	Right Ventricle	heart
12	chr7:86830000-86835000	Weak transcription	Fetal Lung	lung
13	chr7:86830000-86839800	Weak transcription	HSMMtube	muscle
14	chr7:86831000-86847200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:86831400-86836600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:86831600-86838400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:86831800-86838800	ZNF genes & repeats	GM12878-XiMat	blood
18	chr7:86832000-86835000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:86832000-86838000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr7:86832000-86843400	Weak transcription	NHLF	lung
21	chr7:86832200-86836000	Weak transcription	NH-A	brain
22	chr7:86832200-86840600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:86832200-86843200	Weak transcription	Osteobl	bone
24	chr7:86832200-86846000	Weak transcription	HSMM	muscle
25	chr7:86832400-86836400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:86832400-86841000	Weak transcription	Small Intestine	intestine
27	chr7:86832400-86845600	Weak transcription	Pancreas	Pancrea
28	chr7:86832400-86847200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:86832600-86835400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:86833000-86836200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr7:86833000-86836400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr7:86833000-86836600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr7:86833200-86835800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:86833200-86836400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr7:86833200-86836600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:86833400-86835800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:86833400-86836000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:86833400-86837200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr7:86833600-86836000	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr7:86833600-86836600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:86833800-86835000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:86833800-86836200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
43	chr7:86833800-86836400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:86833800-86836400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:86833800-86836400	ZNF genes & repeats	Thymus	Thymus
46	chr7:86833800-86841200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr7:86834000-86835200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:86834000-86835800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:86834000-86836000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
50	chr7:86834000-86836000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood

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