Variant report

Variant	rs187669589
Chromosome Location	chr3:150968695-150968696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150952800-150978400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:150959400-150970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:150959600-150977800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:150959600-150978200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:150961200-150983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:150965000-150980800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:150966400-150970600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:150967000-150969200	Weak transcription	Stomach Mucosa	stomach
13	chr3:150967000-150971400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:150967000-150982600	Weak transcription	Gastric	stomach
15	chr3:150967200-150969400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr3:150967200-150974200	Weak transcription	Fetal Lung	lung
17	chr3:150967600-150971000	Weak transcription	Fetal Stomach	stomach
18	chr3:150967800-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:150967800-150970600	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:150968400-150968800	Strong transcription	Primary B cells from cord blood	blood
21	chr3:150968600-150968800	Enhancers	Right Atrium	heart

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