Variant report

Variant	rs1876857
Chromosome Location	chr11:108991827-108991828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12420493	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1509718	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754383	1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs6589057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108990400-108992600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:108990400-108994800	Enhancers	Fetal Heart	heart
3	chr11:108990600-108992800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:108990800-108992600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:108990800-108993000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:108991000-108992600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:108991000-108992600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:108991200-108992000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:108991200-108992200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:108991200-108992600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:108991200-108992600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:108991200-108992800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:108991400-108994600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:108991600-108994400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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