Variant report

Variant	rs1877061
Chromosome Location	chr2:21451002-21451003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12478996	0.96[EUR][1000 genomes]
rs12623269	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs312027	0.94[EUR][1000 genomes]
rs34340041	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35777541	0.92[EUR][1000 genomes]
rs67758164	0.92[EUR][1000 genomes]
rs71437405	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71437406	0.92[EUR][1000 genomes]
rs925864	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21446400-21451200	Weak transcription	Aorta	Aorta
2	chr2:21449000-21454800	Weak transcription	Spleen	Spleen
3	chr2:21450600-21452400	Enhancers	Fetal Intestine Small	intestine
4	chr2:21450800-21451200	Active TSS	K562	blood
5	chr2:21451000-21451600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:21451000-21452200	Enhancers	Duodenum Mucosa	Duodenum
7	chr2:21451000-21452200	Enhancers	Fetal Intestine Large	intestine
8	chr2:21451000-21452200	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links