Variant report

Variant	rs1877160
Chromosome Location	chr1:226308230-226308231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:226247784..226253760-chr1:226305545..226317702,29	MCF-7	breast:
2	chr1:226185490..226189394-chr1:226308014..226310598,4	MCF-7	breast:
3	chr1:226307897..226312154-chr1:226312339..226317341,13	MCF-7	breast:
4	chr1:226295177..226301855-chr1:226303668..226313005,25	K562	blood:
5	chr1:226308185..226314044-chr1:226494990..226498119,7	K562	blood:
6	chr1:226258835..226263842-chr1:226306097..226310860,6	K562	blood:
7	chr1:226190413..226192206-chr1:226306899..226308744,2	MCF-7	breast:
8	chr1:226292542..226298942-chr1:226306858..226311185,7	K562	blood:
9	chr1:226179972..226182503-chr1:226307578..226310894,3	K562	blood:
10	chr1:226283199..226285727-chr1:226307856..226310769,2	K562	blood:
11	chr1:226307758..226313245-chr1:226372036..226376118,6	MCF-7	breast:
12	chr1:226245827..226258736-chr1:226304107..226314743,27	K562	blood:
13	chr1:226185452..226192151-chr1:226306236..226312570,19	K562	blood:
14	chr1:226185452..226192292-chr1:226307822..226312001,16	K562	blood:
15	chr1:226283361..226286277-chr1:226307915..226310470,2	MCF-7	breast:
16	chr1:226308104..226310336-chr1:226384003..226386775,2	K562	blood:
17	chr1:225964008..225965981-chr1:226307173..226310242,3	K562	blood:
18	chr1:226308006..226310163-chr1:226396483..226398789,2	MCF-7	breast:
19	chr1:226247680..226258196-chr1:226306136..226315725,36	MCF-7	breast:
20	chr1:226255554..226257081-chr1:226306856..226309481,2	MCF-7	breast:
21	chr1:226183543..226186620-chr1:226307621..226310458,4	MCF-7	breast:
22	chr1:226295676..226301816-chr1:226302378..226313716,36	MCF-7	breast:
23	chr1:226303513..226307082-chr1:226307356..226312783,6	K562	blood:
24	chr1:226245827..226262488-chr1:226303989..226311845,34	K562	blood:
25	chr1:226273447..226275398-chr1:226307439..226309300,2	MCF-7	breast:
26	chr1:226267260..226272847-chr1:226307847..226311253,5	K562	blood:
27	chr1:226305715..226313141-chr1:226367413..226376964,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223570	Chromatin interaction
ENSG00000143751	Chromatin interaction
ENSG00000163041	Chromatin interaction
ENSG00000225518	Chromatin interaction
ENSG00000143742	Chromatin interaction
ENSG00000183814	Chromatin interaction
ENSG00000272562	Chromatin interaction
ENSG00000182827	Chromatin interaction
ENSG00000270598	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12026319	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv873232	chr1:226242772-226375267	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	esv1792510	chr1:226277560-226323824	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv832759	chr1:226303760-226504170	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1877160	LEFTY1	cis	cerebellum	SCAN
rs1877160	PARP1	cis	cerebellum	SCAN
rs1877160	C1orf55	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226299000-226308800	Weak transcription	A549	lung
2	chr1:226299600-226308400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:226299600-226308800	Weak transcription	Fetal Intestine Small	intestine
4	chr1:226299800-226308800	Weak transcription	Gastric	stomach
5	chr1:226299800-226309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:226304000-226308800	Weak transcription	HMEC	breast
7	chr1:226304000-226308800	Weak transcription	NHEK	skin
8	chr1:226304200-226308800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:226304200-226308800	Weak transcription	Esophagus	oesophagus
10	chr1:226304600-226308800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:226306000-226308800	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:226306200-226308600	Enhancers	Primary B cells from cord blood	blood
13	chr1:226306200-226309400	Weak transcription	HSMMtube	muscle
14	chr1:226306600-226309000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:226306800-226308400	Weak transcription	K562	blood
16	chr1:226307400-226308800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:226308000-226308400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:226308000-226308800	Enhancers	Primary T cells from cord blood	blood
19	chr1:226308000-226308800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr1:226308000-226308800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:226308000-226308800	Enhancers	Fetal Thymus	thymus
22	chr1:226308000-226309600	Flanking Active TSS	Dnd41	blood
23	chr1:226308200-226308400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:226308200-226308400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:226308200-226308400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:226308200-226308400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:226308200-226308600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:226308200-226308600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr1:226308200-226308600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:226308200-226308600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:226308200-226308600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr1:226308200-226308600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr1:226308200-226308600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:226308200-226308600	Flanking Bivalent TSS/Enh	HepG2	liver
35	chr1:226308200-226308800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr1:226308200-226308800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
37	chr1:226308200-226308800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr1:226308200-226308800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:226308200-226308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:226308200-226308800	Enhancers	Duodenum Mucosa	Duodenum
41	chr1:226308200-226308800	Enhancers	GM12878-XiMat	blood
42	chr1:226308200-226309400	Enhancers	Spleen	Spleen

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