Variant report

Variant	rs1877209
Chromosome Location	chr4:26299125-26299126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26297878..26299553-chr4:26301719..26304155,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1397731	0.91[ASN][1000 genomes]
rs73114543	0.91[ASN][1000 genomes]
rs73114545	0.87[ASN][1000 genomes]
rs7671350	0.91[ASN][1000 genomes]
rs7689811	0.94[ASN][1000 genomes]
rs7697557	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26293400-26300000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:26295200-26300200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:26295400-26300600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:26296800-26299400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:26297000-26300200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:26297200-26299200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:26297200-26300000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:26297400-26304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:26297600-26302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:26297800-26299800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:26298000-26299600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:26298400-26299400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:26298600-26299600	Weak transcription	NH-A	brain
14	chr4:26298800-26299800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:26298800-26300000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:26298800-26302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:26299000-26299200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr4:26299000-26299200	Enhancers	Ovary	ovary
19	chr4:26299000-26299600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:26299000-26299800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:26299000-26299800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:26299000-26299800	Enhancers	NHDF-Ad	bronchial
23	chr4:26299000-26300600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:26299000-26301400	Enhancers	Fetal Lung	lung

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