Variant report

Variant	rs187776206
Chromosome Location	chr19:44764772-44764773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr19:44763798-44765474	HEK293-T-REx	kidney:	n/a	n/a
2	SRF	chr19:44764609-44764807	HepG2	liver:	n/a	chr19:44764706-44764724 chr19:44764709-44764722 chr19:44764707-44764725
3	MAX	chr19:44763851-44764954	A549	lung:	n/a	n/a
4	MXI1	chr19:44763647-44765418	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:44764453..44767160-chr19:44768719..44770239,2	K562	blood:
2	chr19:44763153..44765827-chr19:44767005..44769957,2	MCF-7	breast:
3	chr19:44762662..44765169-chr19:44806024..44808707,2	K562	blood:
4	chr19:44763689..44765733-chr19:44807177..44810075,2	MCF-7	breast:
5	chr19:44764212..44765954-chr19:44776988..44779803,2	MCF-7	breast:
6	chr19:44763163..44765702-chr19:44978103..44979674,2	MCF-7	breast:

Variant related genes	Relation type
ZNF233	TF binding region
ENSG00000267242	Chromatin interaction
ENSG00000159917	Chromatin interaction
ENSG00000159915	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521923	chr19:44764064-44769974	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44763200-44764800	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr19:44763400-44764800	Active TSS	Brain Angular Gyrus	brain
5	chr19:44763400-44765400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:44763600-44764800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr19:44763600-44764800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:44763600-44764800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr19:44763600-44764800	Active TSS	Right Ventricle	heart
10	chr19:44763600-44765000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr19:44763600-44765000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr19:44763600-44765000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:44763600-44765000	Active TSS	Brain Hippocampus Middle	brain
14	chr19:44763600-44765200	Active TSS	Duodenum Mucosa	Duodenum
15	chr19:44763800-44764800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:44763800-44764800	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr19:44763800-44764800	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr19:44763800-44764800	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr19:44763800-44764800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:44763800-44764800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
21	chr19:44763800-44764800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
22	chr19:44763800-44764800	Active TSS	Colonic Mucosa	Colon
23	chr19:44763800-44764800	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr19:44763800-44764800	ZNF genes & repeats	Right Atrium	heart
25	chr19:44763800-44764800	Active TSS	Stomach Smooth Muscle	stomach
26	chr19:44763800-44764800	Active TSS	NHLF	lung
27	chr19:44763800-44765000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:44763800-44765000	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr19:44763800-44765000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
30	chr19:44763800-44765000	Active TSS	Brain Cingulate Gyrus	brain
31	chr19:44763800-44765000	ZNF genes & repeats	Esophagus	oesophagus
32	chr19:44763800-44765000	Active TSS	GM12878-XiMat	blood
33	chr19:44763800-44765200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr19:44763800-44765200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:44763800-44765200	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr19:44763800-44765400	Active TSS	Brain Anterior Caudate	brain
37	chr19:44763800-44765400	Active TSS	Rectal Smooth Muscle	rectum
38	chr19:44764000-44764800	Active TSS	H1 Cell Line	embryonic stem cell
39	chr19:44764000-44764800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr19:44764000-44764800	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr19:44764000-44765000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr19:44764000-44765000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:44764000-44765000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
44	chr19:44764000-44765000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
45	chr19:44764200-44764800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr19:44764200-44764800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr19:44764200-44764800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr19:44764200-44764800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr19:44764200-44764800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr19:44764200-44764800	Flanking Active TSS	Dnd41	blood

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