Variant report

Variant	rs1877798
Chromosome Location	chr10:50217120-50217121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1125517	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12763621	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12763646	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764062	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12764806	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12765141	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12767010	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12768497	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12769016	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12770882	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12774742	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12775861	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775969	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779947	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12782892	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17773323	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1877806	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1913519	0.97[EUR][1000 genomes]
rs1996185	0.97[EUR][1000 genomes]
rs2102686	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2175916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2175917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2254863	0.98[EUR][1000 genomes]
rs2255253	0.99[EUR][1000 genomes]
rs2255360	1.00[EUR][1000 genomes]
rs34706288	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763776	0.80[AMR][1000 genomes]
rs3810954	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7078453	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078724	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082251	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7083453	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50210800-50223600	Weak transcription	Spleen	Spleen
3	chr10:50213400-50223000	Enhancers	Ovary	ovary
4	chr10:50215000-50219400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:50215200-50218400	Enhancers	Fetal Brain Male	brain
6	chr10:50215200-50222400	Enhancers	Left Ventricle	heart
7	chr10:50215400-50219400	Enhancers	Fetal Stomach	stomach
8	chr10:50216000-50217400	Enhancers	Psoas Muscle	Psoas
9	chr10:50216000-50218000	Enhancers	Fetal Lung	lung
10	chr10:50216000-50218800	Enhancers	Right Atrium	heart
11	chr10:50216000-50219800	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:50216000-50219800	Enhancers	Fetal Muscle Leg	muscle
13	chr10:50216200-50217200	Enhancers	Adipose Nuclei	Adipose
14	chr10:50216200-50217400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50216200-50217800	Enhancers	HSMMtube	muscle
16	chr10:50216200-50220000	Enhancers	Fetal Intestine Large	intestine
17	chr10:50216200-50221800	Enhancers	Fetal Intestine Small	intestine
18	chr10:50216400-50217600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:50216600-50218200	Enhancers	Fetal Heart	heart
20	chr10:50216600-50218600	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:50216600-50219000	Enhancers	K562	blood
22	chr10:50216600-50222000	Enhancers	Right Ventricle	heart
23	chr10:50216600-50223000	Enhancers	Placenta	Placenta
24	chr10:50216800-50217200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:50216800-50217200	Enhancers	Aorta	Aorta
26	chr10:50216800-50217200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr10:50216800-50217200	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:50216800-50217400	Active TSS	Rectal Smooth Muscle	rectum
29	chr10:50216800-50218400	Weak transcription	Esophagus	oesophagus
30	chr10:50216800-50218400	Enhancers	Fetal Brain Female	brain
31	chr10:50217000-50217200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:50217000-50217200	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr10:50217000-50217400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:50217000-50217400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:50217000-50218600	Enhancers	Rectal Mucosa Donor 31	rectum

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