Variant report

Variant	rs187780709
Chromosome Location	chr6:11616106-11616107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11615083..11617199-chr6:12286030..12287822,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2128592	chr6:11616092-11616614	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11611200-11616400	Weak transcription	Left Ventricle	heart
3	chr6:11611200-11616400	Weak transcription	Ovary	ovary
4	chr6:11611200-11616400	Weak transcription	Psoas Muscle	Psoas
5	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:11612400-11616400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:11612800-11617000	Enhancers	HSMMtube	muscle
8	chr6:11613000-11616600	Enhancers	NHLF	lung
9	chr6:11613000-11616800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11613200-11616400	Enhancers	NH-A	brain
11	chr6:11613200-11616800	Enhancers	Hela-S3	cervix
12	chr6:11613200-11617000	Enhancers	NHDF-Ad	bronchial
13	chr6:11613200-11617000	Enhancers	Osteobl	bone
14	chr6:11613200-11617200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:11613600-11616200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:11613600-11616800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:11613600-11617000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:11613800-11616600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:11613800-11617000	Enhancers	HSMM	muscle
20	chr6:11614200-11616400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:11614400-11616800	Enhancers	Placenta	Placenta
22	chr6:11614400-11617000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:11614800-11617000	Enhancers	HUVEC	blood vessel
24	chr6:11615400-11617000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:11615600-11616400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:11615600-11616400	Enhancers	Colon Smooth Muscle	Colon
27	chr6:11615600-11616400	Weak transcription	Lung	lung
28	chr6:11615600-11616400	Weak transcription	A549	lung
29	chr6:11615600-11617000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:11615600-11621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:11615800-11616200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:11615800-11616400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:11616000-11616800	Enhancers	Stomach Smooth Muscle	stomach

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