Variant report

Variant	rs187821722
Chromosome Location	chr1:165786118-165786119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TRIM28	chr1:165786086-165786742	K562	blood:	n/a	n/a
2	GATA1	chr1:165786084-165786663	PBDEFetal	blood:	n/a	n/a
3	TAL1	chr1:165786018-165786730	K562	blood:	n/a	n/a
4	MYC	chr1:165785992-165786630	K562	blood:	n/a	n/a
5	CEBPD	chr1:165786088-165786786	K562	blood:	n/a	n/a
6	NR2F2	chr1:165785936-165786791	K562	blood:	n/a	n/a
7	MAX	chr1:165785766-165786675	K562	blood:	n/a	n/a
8	ARID3A	chr1:165786096-165786650	K562	blood:	n/a	n/a
9	CBX3	chr1:165786027-165786708	K562	blood:	n/a	n/a
10	GATA1	chr1:165785823-165786741	K562	blood:	n/a	n/a
11	RCOR1	chr1:165786090-165786756	K562	blood:	n/a	n/a
12	GATA1	chr1:165785935-165786761	PBDE	blood:	n/a	n/a
13	TEAD4	chr1:165785958-165786715	K562	blood:	n/a	n/a
14	JUND	chr1:165786097-165786699	K562	blood:	n/a	n/a
15	EP300	chr1:165785981-165786723	K562	blood:	n/a	n/a
16	GATA2	chr1:165786039-165786713	K562	blood:	n/a	n/a
17	TEAD4	chr1:165785949-165786713	K562	blood:	n/a	n/a
18	BHLHE40	chr1:165785073-165786670	K562	blood:	n/a	n/a
19	CUX1	chr1:165786063-165786576	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165780927..165783548-chr1:165784914..165787282,2	K562	blood:
2	chr1:165738281..165740452-chr1:165785829..165787705,2	K562	blood:
3	chr1:165783564..165786878-chr1:165795722..165800195,9	K562	blood:
4	chr1:165742597..165744682-chr1:165785912..165787963,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv517792	chr1:165785503-165811729	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
4	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165784600-165786600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:165785000-165787600	Enhancers	Fetal Heart	heart
3	chr1:165785400-165788000	Weak transcription	Gastric	stomach
4	chr1:165785600-165786200	Enhancers	K562	blood
5	chr1:165785600-165790600	Weak transcription	Right Atrium	heart
6	chr1:165785800-165786400	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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