Variant report

Variant	rs187839495
Chromosome Location	chrX:138284203-138284204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138273663..138275580-chrX:138283129..138285298,2	K562	blood:
2	chrX:138282011..138285172-chrX:138285245..138287356,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129682	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3346694	chrX:138283686-138289084	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138277400-138285200	Weak transcription	Pancreas	Pancrea
2	chrX:138277600-138285400	Weak transcription	Liver	Liver
3	chrX:138277600-138286000	Weak transcription	Right Atrium	heart
4	chrX:138279000-138284800	Weak transcription	Gastric	stomach
5	chrX:138282600-138284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:138282600-138284800	Weak transcription	Psoas Muscle	Psoas
7	chrX:138282800-138284400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chrX:138282800-138285000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chrX:138282800-138285400	Weak transcription	Esophagus	oesophagus
10	chrX:138283000-138285000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chrX:138283000-138288600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chrX:138283200-138284400	Weak transcription	HSMMtube	muscle
13	chrX:138283400-138284400	Weak transcription	K562	blood
14	chrX:138283600-138284400	Weak transcription	NH-A	brain
15	chrX:138284000-138284400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chrX:138284000-138284600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chrX:138284000-138284600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chrX:138284200-138284400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chrX:138284200-138284400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chrX:138284200-138284400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chrX:138284200-138284400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chrX:138284200-138284600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chrX:138284200-138284600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chrX:138284200-138284600	Enhancers	Brain Germinal Matrix	brain
25	chrX:138284200-138284600	Active TSS	Fetal Brain Female	brain
26	chrX:138284200-138285000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links