Variant report

Variant	rs187865058
Chromosome Location	chr2:190651384-190651385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:190647276..190650554-chr2:190651285..190655596,9	MCF-7	breast:
2	chr2:190651111..190653686-chr2:190669212..190673503,3	K562	blood:
3	chr2:190615675..190618614-chr2:190648414..190651811,3	K562	blood:
4	chr2:190649682..190653858-chr2:190657943..190661151,4	K562	blood:
5	chr2:190524324..190528374-chr2:190645867..190651485,5	K562	blood:
6	chr2:190523468..190528374-chr2:190647262..190651485,5	K562	blood:
7	chr2:190624834..190631096-chr2:190647637..190651740,7	K562	blood:
8	chr2:190626375..190630628-chr2:190647839..190651386,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128699	Chromatin interaction
ENSG00000273240	Chromatin interaction
ENSG00000064933	Chromatin interaction
ENSG00000223249	Chromatin interaction
ENSG00000128694	Chromatin interaction
ENSG00000253559	Chromatin interaction
ENSG00000138381	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875616	chr2:190650460-190656614	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190649600-190656200	Weak transcription	Spleen	Spleen
2	chr2:190649600-190658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:190649800-190657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:190649800-190658600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:190649800-190662200	Weak transcription	Aorta	Aorta
6	chr2:190649800-190662200	Weak transcription	Left Ventricle	heart
7	chr2:190649800-190662800	Weak transcription	Lung	lung
8	chr2:190649800-190667200	Weak transcription	Pancreas	Pancrea
9	chr2:190649800-190675200	Weak transcription	Esophagus	oesophagus
10	chr2:190649800-190713400	Weak transcription	Gastric	stomach
11	chr2:190650000-190656000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:190650000-190657000	Weak transcription	Placenta	Placenta
13	chr2:190650000-190688200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:190650200-190656400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:190650200-190656800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:190650200-190657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:190650200-190658600	Weak transcription	Ovary	ovary
18	chr2:190650200-190662800	Weak transcription	Psoas Muscle	Psoas
19	chr2:190650200-190668200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:190650200-190669200	Weak transcription	Right Ventricle	heart
21	chr2:190650200-190673000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:190650200-190673200	Weak transcription	Small Intestine	intestine
23	chr2:190650400-190651400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr2:190650400-190651400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:190650400-190651800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:190650400-190652000	Weak transcription	NH-A	brain
27	chr2:190650400-190652200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:190650400-190652400	Weak transcription	NHDF-Ad	bronchial
29	chr2:190650400-190652600	Weak transcription	Liver	Liver
30	chr2:190650400-190652800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:190650400-190653400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:190650400-190656200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr2:190650400-190656400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr2:190650400-190656400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr2:190650400-190656400	Weak transcription	Brain Anterior Caudate	brain
36	chr2:190650400-190656400	Weak transcription	Fetal Intestine Large	intestine
37	chr2:190650400-190657000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr2:190650400-190657600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:190650400-190657600	Weak transcription	Primary T cells from cord blood	blood
40	chr2:190650400-190657600	Weak transcription	Brain Angular Gyrus	brain
41	chr2:190650400-190657600	Weak transcription	Fetal Intestine Small	intestine
42	chr2:190650400-190659600	Weak transcription	HSMMtube	muscle
43	chr2:190650400-190662200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr2:190650400-190662200	Weak transcription	Brain Substantia Nigra	brain
45	chr2:190650400-190662600	Weak transcription	Brain Hippocampus Middle	brain
46	chr2:190650400-190662800	Weak transcription	Colon Smooth Muscle	Colon
47	chr2:190650400-190664600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr2:190650400-190666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr2:190650400-190667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr2:190650400-190670400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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