Variant report

Variant	rs1878981
Chromosome Location	chr3:139952125-139952126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1878983	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4269048	1.00[MEX][hapmap]
rs4308238	1.00[MEX][hapmap]
rs4312621	1.00[MEX][hapmap]
rs4557115	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4577424	1.00[MEX][hapmap]
rs58112660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58304638	1.00[AMR][1000 genomes]
rs58535926	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58964530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59740557	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60014861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61283355	0.85[AMR][1000 genomes]
rs61627775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988165	1.00[AMR][1000 genomes]
rs72988193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988194	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988195	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988198	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139938600-139953600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:139948400-139953000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:139952000-139952200	Enhancers	Ovary	ovary
4	chr3:139952000-139954800	Enhancers	HSMMtube	muscle

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