Variant report

Variant	rs1879151
Chromosome Location	chr8:120995367-120995368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120993625..120995992-chr8:121085648..121088455,2	MCF-7	breast:
2	chr8:120995322..120997703-chr8:121049057..121050799,2	MCF-7	breast:
3	chr8:120883348..120885416-chr8:120993271..120996165,2	MCF-7	breast:
4	chr8:120994947..120997560-chr8:121091534..121094134,2	MCF-7	breast:
5	chr8:120885927..120888357-chr8:120992198..120996692,5	MCF-7	breast:
6	chr8:120867034..120868892-chr8:120993667..120996402,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136982	Chromatin interaction
ENSG00000155792	Chromatin interaction
ENSG00000245330	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72673647	1.00[AFR][1000 genomes]
rs72675745	1.00[AFR][1000 genomes]
rs72690132	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120978000-121013600	Weak transcription	Gastric	stomach
2	chr8:120985600-120996800	Enhancers	Stomach Mucosa	stomach
3	chr8:120986400-120999600	Weak transcription	Spleen	Spleen
4	chr8:120988400-120996800	Enhancers	Fetal Intestine Small	intestine
5	chr8:120990800-121001600	Weak transcription	Ovary	ovary
6	chr8:120991000-120999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:120991200-121013400	Weak transcription	Fetal Stomach	stomach
8	chr8:120991400-121003000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:120993000-120995800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:120993000-120996400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:120993000-120996600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:120993000-120996800	Enhancers	Fetal Intestine Large	intestine
13	chr8:120993200-120995600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:120993200-120996400	Enhancers	Primary T cells from cord blood	blood
15	chr8:120993200-120996400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:120993600-120995400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:120993600-120995600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:120993600-120995600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr8:120993600-120996000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr8:120993600-120996000	Enhancers	Placenta	Placenta
21	chr8:120993600-120996000	Enhancers	NHEK	skin
22	chr8:120993600-120996400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:120993600-120996600	Enhancers	Fetal Thymus	thymus
24	chr8:120994200-120995400	Enhancers	Osteobl	bone
25	chr8:120994200-120995600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:120994200-120996400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:120994400-120995400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:120994400-120995400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:120994400-120995400	Enhancers	Adipose Nuclei	Adipose
30	chr8:120994400-120995400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr8:120994400-120995600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:120994400-120995600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:120994400-120995600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:120994400-120995600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:120994400-120995600	Enhancers	K562	blood
36	chr8:120994400-120995800	Enhancers	Fetal Kidney	kidney
37	chr8:120994400-120996000	Enhancers	Rectal Smooth Muscle	rectum
38	chr8:120994400-120996200	Enhancers	HMEC	breast
39	chr8:120994400-120996400	Enhancers	Brain Substantia Nigra	brain
40	chr8:120994400-120996400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr8:120994400-120996600	Enhancers	Duodenum Mucosa	Duodenum
42	chr8:120994600-120995400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr8:120994600-120995400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr8:120994600-120995400	Flanking Active TSS	A549	lung
45	chr8:120994600-120995400	Flanking Active TSS	Hela-S3	cervix
46	chr8:120994600-120995400	Enhancers	HSMMtube	muscle
47	chr8:120994600-120995400	Enhancers	NH-A	brain
48	chr8:120994600-120995600	Enhancers	Liver	Liver
49	chr8:120994600-120995800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr8:120994600-120995800	Enhancers	Brain Angular Gyrus	brain

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