Variant report

Variant	rs1879346
Chromosome Location	chr15:56489135-56489136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr15:56489086-56489192	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56485304..56488129-chr15:56488802..56490331,2	MCF-7	breast:
2	chr15:56467090..56469731-chr15:56488365..56490022,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261072	TF binding region
ENSG00000261072	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12593506	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs34431355	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv519725	chr15:56485598-56496582	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
5	chr15:56463600-56496600	Weak transcription	NHEK	skin
6	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56465800-56496600	Weak transcription	HMEC	breast
10	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
11	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
12	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:56466200-56494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:56466400-56495400	Weak transcription	Fetal Stomach	stomach
15	chr15:56466800-56494600	Weak transcription	Fetal Intestine Large	intestine
16	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
18	chr15:56469600-56491400	Weak transcription	A549	lung
19	chr15:56470200-56498800	Weak transcription	Dnd41	blood
20	chr15:56470800-56496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
22	chr15:56474200-56495000	Weak transcription	K562	blood
23	chr15:56476600-56496200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr15:56477000-56495800	Weak transcription	Primary B cells from cord blood	blood
25	chr15:56477000-56500400	Weak transcription	Liver	Liver
26	chr15:56477200-56497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:56479800-56496200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:56480000-56495000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:56480000-56496200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:56480000-56496600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:56480000-56500000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:56480200-56494600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:56480200-56497000	Weak transcription	HUVEC	blood vessel
34	chr15:56480200-56515400	Weak transcription	Hela-S3	cervix
35	chr15:56480800-56489800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:56480800-56492600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:56480800-56496200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:56481400-56497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:56482600-56497000	Weak transcription	NH-A	brain
40	chr15:56482600-56500200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:56482800-56489200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:56483000-56491400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:56483000-56491600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:56483400-56495000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:56484200-56492200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:56484200-56492200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:56484800-56496200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:56484800-56500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:56485000-56489800	Weak transcription	GM12878-XiMat	blood
50	chr15:56485000-56502800	Weak transcription	Gastric	stomach

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