Variant report

Variant	rs187972878
Chromosome Location	chr6:110552830-110552831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110521889..110524883-chr6:110552437..110554588,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR6-1	chr6:110552655-110552835	ENSG00000244179.1

Variant related genes	Relation type
ENSG00000168438	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv1801843	chr6:110506109-110566328	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv981172	chr6:110551282-110553172	Weak transcription Strong transcription	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110522400-110553200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:110528200-110557400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:110530000-110556400	Weak transcription	Small Intestine	intestine
4	chr6:110530800-110558400	Weak transcription	Stomach Mucosa	stomach
5	chr6:110537400-110554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:110537800-110555000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:110537800-110558600	Weak transcription	Gastric	stomach
8	chr6:110539000-110554000	Weak transcription	Aorta	Aorta
9	chr6:110539000-110563600	Weak transcription	Lung	lung
10	chr6:110539000-110580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:110539200-110558200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:110539200-110560000	Weak transcription	Esophagus	oesophagus
13	chr6:110539400-110558400	Weak transcription	Fetal Brain Male	brain
14	chr6:110539400-110558600	Weak transcription	HUVEC	blood vessel
15	chr6:110540000-110567000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:110541200-110567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:110541600-110555200	Weak transcription	HSMMtube	muscle
18	chr6:110542600-110553400	Weak transcription	Osteobl	bone
19	chr6:110542600-110555000	Weak transcription	Colonic Mucosa	Colon
20	chr6:110542600-110555000	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:110543000-110555200	Weak transcription	Hela-S3	cervix
22	chr6:110544200-110556800	Weak transcription	HMEC	breast
23	chr6:110544600-110566400	Weak transcription	Fetal Stomach	stomach
24	chr6:110547000-110576600	Weak transcription	Pancreas	Pancrea
25	chr6:110548200-110554200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:110548200-110556200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:110548800-110554000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:110548800-110558600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:110549000-110562400	Weak transcription	Psoas Muscle	Psoas
30	chr6:110549000-110567400	Weak transcription	Fetal Intestine Large	intestine
31	chr6:110549200-110553400	Weak transcription	NHDF-Ad	bronchial
32	chr6:110549200-110555000	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:110549200-110559000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:110549400-110553400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:110549400-110553400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:110549400-110555000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:110549400-110555200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:110549400-110555200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:110549400-110555200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:110549400-110557000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:110549400-110557000	Weak transcription	Fetal Lung	lung
42	chr6:110549400-110558400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:110549400-110560800	Weak transcription	K562	blood
44	chr6:110549400-110561000	Weak transcription	NH-A	brain
45	chr6:110549400-110561800	Weak transcription	Fetal Brain Female	brain
46	chr6:110549400-110562200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:110549400-110580400	Weak transcription	Brain Angular Gyrus	brain
48	chr6:110549600-110559000	Weak transcription	Thymus	Thymus
49	chr6:110549600-110560000	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:110549600-110562000	Weak transcription	Brain Germinal Matrix	brain

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