Variant report

Variant	rs187976552
Chromosome Location	chr9:18825426-18825427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr9:18825029-18825459	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ADAMTSL1	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv972297	chr9:18825298-18826375	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18806400-18826000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:18815400-18829200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:18818000-18845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18818200-18828800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:18822000-18826800	Enhancers	Fetal Heart	heart
6	chr9:18822600-18826000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:18822800-18826000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:18823000-18826400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:18823000-18834400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:18823400-18826600	Enhancers	Lung	lung
11	chr9:18824000-18826200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:18824000-18827400	Enhancers	Primary T cells from cord blood	blood
13	chr9:18824000-18827800	Enhancers	Fetal Thymus	thymus
14	chr9:18824200-18825600	Genic enhancers	NHDF-Ad	bronchial
15	chr9:18824200-18825800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:18824400-18825800	Enhancers	Adipose Nuclei	Adipose
17	chr9:18824400-18826600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:18824800-18825800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:18825000-18825600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:18825000-18825600	Enhancers	Dnd41	blood
21	chr9:18825000-18825600	Enhancers	NHLF	lung
22	chr9:18825000-18825800	Enhancers	Fetal Muscle Leg	muscle
23	chr9:18825000-18826000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr9:18825000-18826000	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:18825000-18826000	Genic enhancers	Fetal Stomach	stomach
26	chr9:18825000-18826200	Enhancers	Fetal Lung	lung
27	chr9:18825000-18826400	Enhancers	Primary T cells fromperipheralblood	blood
28	chr9:18825000-18826600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:18825200-18825800	Enhancers	Small Intestine	intestine
30	chr9:18825200-18825800	Genic enhancers	Osteobl	bone
31	chr9:18825200-18826200	Enhancers	HUVEC	blood vessel
32	chr9:18825200-18826400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:18825200-18826400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr9:18825200-18826400	Weak transcription	Gastric	stomach
35	chr9:18825200-18827800	Strong transcription	NH-A	brain
36	chr9:18825400-18825800	Enhancers	Primary hematopoietic stem cells	blood
37	chr9:18825400-18825800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:18825400-18826000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:18825400-18826200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:18825400-18826400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr9:18825400-18826600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr9:18825400-18827400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:18825400-18828200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:18825400-18829800	Weak transcription	Aorta	Aorta
45	chr9:18825400-18829800	Weak transcription	Psoas Muscle	Psoas
46	chr9:18825400-18833000	Strong transcription	HSMM	muscle
47	chr9:18825400-18833400	Weak transcription	Right Ventricle	heart
48	chr9:18825400-18845200	Weak transcription	HSMMtube	muscle
49	chr9:18825400-18857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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