Variant report

Variant	rs188026766
Chromosome Location	chr5:74160752-74160753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74160377-74163048	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:74160742-74161053	HepG2	liver:	n/a	n/a
3	CEBPB	chr5:74160706-74161130	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
4	MYC	chr5:74160723-74161025	MCF10A-Er-Src	breast:	n/a	n/a
5	HDAC2	chr5:74160705-74161091	HepG2	liver:	n/a	n/a
6	POLR2A	chr5:74160566-74160814	HepG2	liver:	n/a	n/a
7	CEBPB	chr5:74160726-74161091	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
8	MBD4	chr5:74160507-74161108	HepG2	liver:	n/a	n/a
9	CEBPB	chr5:74160717-74161164	MCF-7	breast:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
10	MYBL2	chr5:74160594-74161184	HepG2	liver:	n/a	n/a
11	EP300	chr5:74160676-74161098	HepG2	liver:	n/a	n/a
12	CEBPB	chr5:74160738-74161102	H1-hESC	embryonic stem cell:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
13	SMC3	chr5:74160673-74161461	HepG2	liver:	n/a	n/a
14	HEY1	chr5:74160559-74161026	HepG2	liver:	n/a	n/a
15	ZNF263	chr5:74160620-74162789	HEK293-T-REx	kidney:	n/a	n/a
16	TEAD4	chr5:74160582-74161144	HepG2	liver:	n/a	n/a
17	FOS	chr5:74160744-74161028	MCF10A-Er-Src	breast:	n/a	n/a
18	GATA3	chr5:74160702-74161059	T-47D	breast:	n/a	n/a
19	POLR2A	chr5:74160110-74160838	H1-hESC	embryonic stem cell:	n/a	n/a
20	CREB1	chr5:74160647-74163073	HepG2	liver:	n/a	n/a
21	SIN3A	chr5:74160653-74163041	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr5:74160621-74161159	MCF-7	breast:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
23	MBD4	chr5:74160663-74161501	HepG2	liver:	n/a	n/a
24	CHD1	chr5:74160489-74163268	H1-hESC	embryonic stem cell:	n/a	chr5:74162137-74162147 chr5:74162977-74162984
25	POLR2A	chr5:74160744-74161027	HepG2	liver:	n/a	n/a
26	FOS	chr5:74160735-74161033	MCF10A-Er-Src	breast:	n/a	n/a
27	POLR2A	chr5:74160249-74161841	HepG2	liver:	n/a	n/a
28	CEBPB	chr5:74160744-74161091	A549	lung:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
29	KAP1	chr5:74160385-74161861	HEK293	kidney:	n/a	n/a
30	NFIC	chr5:74160667-74161110	HepG2	liver:	n/a	n/a
31	GATA3	chr5:74160687-74161011	T-47D	breast:	n/a	n/a
32	HEY1	chr5:74160345-74163102	HepG2	liver:	n/a	chr5:74161997-74162012 chr5:74162243-74162258 chr5:74162276-74162291 chr5:74162345-74162360
33	MAX	chr5:74160584-74163163	HepG2	liver:	n/a	chr5:74162270-74162280 chr5:74162396-74162406
34	FOXA2	chr5:74160704-74161058	HepG2	liver:	n/a	n/a
35	CEBPB	chr5:74160652-74161123	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
36	MAX	chr5:74160718-74160918	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000271714	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338870	chr5:74159996-74164294	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:74148200-74161200	Weak transcription	Right Atrium	heart
3	chr5:74148800-74160800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:74149400-74160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:74157200-74161000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:74157800-74160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:74158600-74161000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:74158600-74163000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr5:74158800-74163800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr5:74159000-74162800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr5:74159400-74160800	Enhancers	Brain Substantia Nigra	brain
12	chr5:74159400-74161000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:74159400-74161000	Flanking Active TSS	NHEK	skin
14	chr5:74159400-74163000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:74159400-74163000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr5:74159400-74163800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr5:74159600-74160800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:74159600-74161000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:74159600-74162800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:74159800-74160800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:74159800-74160800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr5:74159800-74163000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:74160000-74162800	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr5:74160000-74163000	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr5:74160200-74162200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:74160200-74163000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:74160200-74163000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:74160400-74160800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr5:74160400-74160800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr5:74160400-74160800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:74160400-74160800	Enhancers	Brain Hippocampus Middle	brain
32	chr5:74160400-74160800	Enhancers	Fetal Brain Female	brain
33	chr5:74160400-74161000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr5:74160400-74161400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:74160400-74161600	Bivalent/Poised TSS	HepG2	liver
36	chr5:74160400-74162800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr5:74160400-74163000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:74160400-74163000	Active TSS	Brain Angular Gyrus	brain
39	chr5:74160400-74163200	Active TSS	Brain Cingulate Gyrus	brain
40	chr5:74160600-74160800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr5:74160600-74160800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:74160600-74160800	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr5:74160600-74160800	Bivalent Enhancer	Fetal Intestine Large	intestine
44	chr5:74160600-74160800	Enhancers	Fetal Intestine Small	intestine
45	chr5:74160600-74160800	Enhancers	Fetal Thymus	thymus
46	chr5:74160600-74160800	Enhancers	A549	lung
47	chr5:74160600-74161000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
48	chr5:74160600-74161000	Enhancers	Fetal Brain Male	brain
49	chr5:74160600-74161000	Flanking Active TSS	HMEC	breast
50	chr5:74160600-74161200	Enhancers	Primary T cells fromperipheralblood	blood

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