Variant report

Variant	rs1880371
Chromosome Location	chr7:27583346-27583347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27582585..27584143-chr7:27588218..27591051,2	K562	blood:
2	chr7:27581086..27583584-chr7:27586153..27588098,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11979446	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap]
rs16874319	0.85[AMR][1000 genomes]
rs17155460	0.89[ASW][hapmap]
rs17155494	0.87[AMR][1000 genomes]
rs17155513	1.00[AMR][1000 genomes]
rs17155546	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17155566	0.89[ASW][hapmap]
rs59163753	1.00[AMR][1000 genomes]
rs73282806	1.00[AMR][1000 genomes]
rs73285164	1.00[AMR][1000 genomes]
rs73285189	1.00[AMR][1000 genomes]
rs73287115	0.84[AFR][1000 genomes]
rs73299366	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27556400-27584400	Weak transcription	NHEK	skin
2	chr7:27556400-27586400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:27559400-27584200	Weak transcription	Pancreas	Pancrea
4	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
5	chr7:27559800-27593000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:27564200-27585400	Weak transcription	Small Intestine	intestine
7	chr7:27565600-27592200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:27566000-27583800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:27566800-27593200	Weak transcription	Lung	lung
10	chr7:27569600-27602200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:27570000-27586400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:27573400-27590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:27579000-27596000	Weak transcription	Right Ventricle	heart
14	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
15	chr7:27581200-27588400	Weak transcription	HepG2	liver
16	chr7:27581200-27591400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:27581200-27591600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:27581400-27583400	Weak transcription	Fetal Brain Male	brain
19	chr7:27581400-27583800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:27581400-27583800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:27581400-27584000	Weak transcription	Spleen	Spleen
22	chr7:27581400-27584400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:27581400-27584600	Weak transcription	Brain Angular Gyrus	brain
24	chr7:27581400-27585000	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:27581400-27586000	Weak transcription	HSMMtube	muscle
26	chr7:27581400-27586800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:27581400-27587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:27581400-27588000	Weak transcription	A549	lung
29	chr7:27581400-27591400	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:27581400-27591600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:27581400-27591800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:27581400-27594400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:27581400-27600200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:27581600-27583400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:27581600-27584000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:27581600-27584000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:27581600-27584200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr7:27581600-27584200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:27581600-27584200	Weak transcription	Dnd41	blood
41	chr7:27581600-27584800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:27581600-27586000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:27581600-27586200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:27581600-27586400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:27581600-27586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:27581600-27587000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:27581600-27587000	Weak transcription	Adipose Nuclei	Adipose
48	chr7:27581600-27594400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:27581600-27600200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:27581600-27602800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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