Variant report

Variant	rs188093057
Chromosome Location	chr15:54810845-54810846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv275383	chr15:54810814-54814852	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54811200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54809600-54811200	Enhancers	Fetal Intestine Small	intestine
5	chr15:54809600-54811200	Enhancers	Fetal Kidney	kidney
6	chr15:54809600-54811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
8	chr15:54809800-54811600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:54809800-54811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:54810200-54812000	Enhancers	Adipose Nuclei	Adipose
11	chr15:54810400-54811000	Enhancers	Aorta	Aorta
12	chr15:54810600-54811000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:54810600-54811000	Enhancers	Colon Smooth Muscle	Colon
14	chr15:54810600-54811000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:54810600-54811200	Enhancers	Brain Hippocampus Middle	brain
16	chr15:54810800-54811000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:54810800-54811200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:54810800-54811200	Enhancers	GM12878-XiMat	blood
19	chr15:54810800-54811400	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links