Variant report

Variant	rs188103191
Chromosome Location	chr8:126593571-126593572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126591683..126594528-chr8:126604953..126606548,2	K562	blood:
2	chr8:126592961..126594666-chr8:126603938..126605486,2	MCF-7	breast:
3	chr8:126588899..126591050-chr8:126592630..126595542,2	MCF-7	breast:
4	chr8:126586635..126589036-chr8:126593188..126594968,2	MCF-7	breast:
5	chr8:126592991..126596537-chr8:126599819..126603670,10	MCF-7	breast:
6	chr8:126442143..126446665-chr8:126589959..126594389,6	MCF-7	breast:
7	chr8:126593358..126595719-chr8:126599796..126603386,4	K562	blood:
8	chr8:126464442..126466881-chr8:126591408..126593656,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126587000-126594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:126587800-126594800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:126589600-126594600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:126589800-126594400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:126592200-126594600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:126592600-126603800	Weak transcription	Pancreas	Pancrea
7	chr8:126592800-126595400	Weak transcription	Brain Substantia Nigra	brain
8	chr8:126593000-126594600	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links