Variant report

Variant	rs188126091
Chromosome Location	chr5:43315968-43315969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
HMGCS1	TF binding region
ENSG00000151881	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000112972	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv3360596	chr5:43315646-43336665	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43314200-43316200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:43314200-43316200	Enhancers	Hela-S3	cervix
3	chr5:43314200-43317000	Enhancers	HMEC	breast
4	chr5:43314400-43316400	Enhancers	NHEK	skin
5	chr5:43314400-43316600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:43314400-43319200	Weak transcription	Fetal Intestine Large	intestine
7	chr5:43314600-43316000	Weak transcription	Stomach Mucosa	stomach
8	chr5:43314600-43316400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:43314600-43316400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr5:43314600-43316400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:43314800-43316000	ZNF genes & repeats	GM12878-XiMat	blood
12	chr5:43315600-43319600	Weak transcription	K562	blood
13	chr5:43315800-43316000	Active TSS	A549	lung
14	chr5:43315800-43316200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:43315800-43316800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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