Variant report

Variant	rs188139290
Chromosome Location	chr6:132709206-132709207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604669	chr6:132702249-132712307	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv5480	chr6:132705614-132714040	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3486501	chr6:132706459-132713557	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3486500	chr6:132706884-132713457	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3486503	chr6:132706884-132713457	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3486502	chr6:132707378-132712799	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
10	nsv499756	chr6:132707546-132712422	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
11	esv19195	chr6:132707651-132712477	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
12	nsv604670	chr6:132708163-132710831	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv604671	chr6:132708163-132711117	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv604672	chr6:132708163-132711678	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv604673	chr6:132708163-132711772	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv604674	chr6:132708163-132711933	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv604675	chr6:132708163-132712233	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv604676	chr6:132708163-132712307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv604677	chr6:132708163-132718231	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv604678	chr6:132708327-132711678	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv604679	chr6:132708327-132711772	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv604680	chr6:132708327-132712233	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv604681	chr6:132708327-132712307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv604682	chr6:132709027-132711117	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv604683	chr6:132709027-132711200	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv604684	chr6:132709027-132711678	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv604685	chr6:132709027-132711772	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv604686	chr6:132709027-132711933	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv604687	chr6:132709027-132712233	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
30	nsv604688	chr6:132709027-132712307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132693200-132709400	Weak transcription	Fetal Lung	lung
2	chr6:132701600-132709400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:132701600-132713200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:132702000-132709400	Weak transcription	Osteobl	bone
5	chr6:132704200-132712800	Weak transcription	HSMMtube	muscle
6	chr6:132706400-132709400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:132706600-132711600	Weak transcription	Fetal Brain Male	brain
8	chr6:132707800-132711800	Weak transcription	NHLF	lung
9	chr6:132709000-132711800	Enhancers	NHDF-Ad	bronchial
10	chr6:132709000-132712800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:132709200-132709600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132709200-132709600	Enhancers	Fetal Kidney	kidney
13	chr6:132709200-132709800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:132709200-132709800	Enhancers	NHEK	skin
15	chr6:132709200-132712800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:132709200-132712800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links