Variant report

Variant	rs1881540
Chromosome Location	chr7:80694313-80694314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80525666..80528022-chr7:80693500..80695168,2	MCF-7	breast:
2	chr7:80692851..80695599-chr7:80695778..80697561,2	MCF-7	breast:
3	chr7:80550910..80552640-chr7:80692789..80694831,2	MCF-7	breast:
4	chr7:80570440..80573210-chr7:80694218..80696148,2	MCF-7	breast:
5	chr7:80544433..80547832-chr7:80692006..80696371,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10224681	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10261354	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10261594	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10265617	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10268721	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10279257	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10480512	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528387	1.00[CHB][hapmap]
rs1881543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919368	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2204723	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2204724	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2367224	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847120	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3914077	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3915317	1.00[JPT][hapmap]
rs4593473	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6467571	0.82[ASN][1000 genomes]
rs6942673	0.82[ASN][1000 genomes]
rs6958657	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6968624	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968832	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80691600-80695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:80691800-80695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:80692600-80695200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:80693200-80694400	Enhancers	HSMM	muscle
5	chr7:80693200-80695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:80693800-80695200	Enhancers	Fetal Muscle Leg	muscle
7	chr7:80694000-80694600	Weak transcription	Aorta	Aorta
8	chr7:80694000-80695000	Weak transcription	Adipose Nuclei	Adipose

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