Variant report

Variant	rs1881678
Chromosome Location	chr3:111044977-111044978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1881677	1.00[ASN][1000 genomes]
rs2130078	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171635	1.00[ASN][1000 genomes]
rs4682039	1.00[ASN][1000 genomes]
rs6783451	1.00[ASN][1000 genomes]
rs7618819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622384	1.00[ASN][1000 genomes]
rs7634000	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111041000-111045000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:111041600-111047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111043400-111045400	Enhancers	HSMM	muscle
4	chr3:111043600-111045200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:111043600-111045400	Enhancers	NHDF-Ad	bronchial
6	chr3:111043600-111045800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:111043800-111045000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:111043800-111045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:111043800-111045200	Enhancers	GM12878-XiMat	blood
10	chr3:111043800-111052200	Weak transcription	HMEC	breast
11	chr3:111044000-111045400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:111044400-111045000	Weak transcription	HSMMtube	muscle
13	chr3:111044400-111045800	Enhancers	Dnd41	blood
14	chr3:111044600-111045000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:111044600-111045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:111044600-111045000	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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