Variant report

Variant	rs188181439
Chromosome Location	chr10:43867096-43867097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr10:43866923-43867148	K562	blood:	n/a	n/a
2	BHLHE40	chr10:43866925-43867233	K562	blood:	n/a	n/a
3	USF1	chr10:43866952-43867263	K562	blood:	n/a	n/a
4	USF1	chr10:43866914-43867182	K562	blood:	n/a	n/a
5	JUND	chr10:43867027-43867110	K562	blood:	n/a	n/a
6	SIN3AK20	chr10:43866879-43867177	K562	blood:	n/a	n/a
7	MAX	chr10:43866939-43867235	Hela-S3	cervix:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
8	MYC	chr10:43866923-43867298	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
9	MAX	chr10:43866904-43867282	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
10	HMGN3	chr10:43867023-43867186	K562	blood:	n/a	n/a
11	ZNF384	chr10:43866895-43867123	K562	blood:	n/a	n/a
12	MAX	chr10:43866896-43867253	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
13	MAX	chr10:43866935-43867171	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
14	MYC	chr10:43866938-43867194	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
15	TCF7L2	chr10:43866930-43867342	Hela-S3	cervix:	n/a	n/a
16	ZBTB7A	chr10:43866849-43867113	K562	blood:	n/a	n/a
17	CCNT2	chr10:43867032-43867212	K562	blood:	n/a	n/a
18	MXI1	chr10:43866937-43867249	Hela-S3	cervix:	n/a	chr10:43867068-43867077 chr10:43867066-43867075
19	POLR2A	chr10:43866870-43867430	MCF-7	breast:	n/a	n/a
20	MXI1	chr10:43867005-43867223	K562	blood:	n/a	chr10:43867068-43867077 chr10:43867066-43867075
21	JUN	chr10:43866846-43867413	K562	blood:	n/a	n/a
22	MAZ	chr10:43866951-43867122	K562	blood:	n/a	chr10:43867066-43867077 chr10:43867068-43867075 chr10:43867067-43867076 chr10:43867066-43867076
23	USF2	chr10:43866990-43867144	Hela-S3	cervix:	n/a	chr10:43867066-43867077
24	POLR2A	chr10:43867036-43867222	MCF-7	breast:	n/a	n/a
25	TBL1XR1	chr10:43867069-43867160	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:43867064-43867114	AG04450	lung:	fetal
2	chr10:43867071-43867121	HEK293	kidney:	embryo
3	chr10:43867064-43867114	HEEpiC	esophagus:	n/a
4	chr10:43867071-43867121	HUVEC	blood vessel:	n/a
5	chr10:43867071-43867121	AoSMC	blood vessel:	n/a
6	chr10:43867071-43867121	SK-N-SH_RA	brain:	n/a
7	chr10:43867071-43867121	NH-A	brain:	n/a
8	chr10:43867071-43867121	GM12891	blood:	n/a
9	chr10:43867071-43867121	HPAEpiC	pulmonary alveolar:	n/a
10	chr10:43867071-43867121	Hela-S3	cervix:	n/a
11	chr10:43867071-43867121	HRCEpiC	kidney:	n/a
12	chr10:43867064-43867114	GM06990	blood:	n/a
13	chr10:43867064-43867114	A549	lung:	n/a
14	chr10:43867071-43867121	SK-N-MC	brain:	n/a
15	chr10:43867071-43867121	GM12892	blood:	n/a
16	chr10:43867064-43867114	HUVEC	blood vessel:	n/a
17	chr10:43867071-43867121	AG10803	skin:	n/a
18	chr10:43867071-43867121	BJ	skin:	n/a
19	chr10:43867071-43867121	GM06990	blood:	n/a
20	chr10:43867071-43867121	HCT-116	colon:	n/a
21	chr10:43867071-43867121	IMR90	lung:	fetal
22	chr10:43867071-43867121	AG04449	skin:	fetal
23	chr10:43867071-43867121	HRE	kidney:	n/a
24	chr10:43867071-43867121	HepG2	liver:	n/a
25	chr10:43867071-43867121	ovcar-3	ovarian:	n/a
26	chr10:43867064-43867114	AG09309	skin:	n/a
27	chr10:43867064-43867114	PFSK-1	brain:	n/a
28	chr10:43867064-43867114	SKMC	muscle:	n/a
29	chr10:43867071-43867121	SK-N-SH	brain:	n/a
30	chr10:43867064-43867114	NB4	blood:	n/a
31	chr10:43867071-43867121	H1-hESC	embryonic stem cell:	embryo
32	chr10:43867064-43867114	K562	blood:	n/a
33	chr10:43867064-43867114	H1-hESC	embryonic stem cell:	embryo
34	chr10:43867071-43867121	RPTEC	kidney:	n/a
35	chr10:43867064-43867114	BJ	skin:	n/a
36	chr10:43867064-43867114	CMK	blood:	n/a
37	chr10:43867071-43867121	HCPEpiC	choroid plexus:	n/a
38	chr10:43867071-43867121	Caco-2	colon:	n/a
39	chr10:43867064-43867114	HCT-116	colon:	n/a
40	chr10:43867071-43867121	U87	brain:	n/a
41	chr10:43867064-43867114	SK-N-SH_RA	brain:	n/a
42	chr10:43867071-43867121	A549	lung:	n/a
43	chr10:43867064-43867114	BE2_C	brain:	n/a
44	chr10:43867064-43867114	GM12891	blood:	n/a
45	chr10:43867064-43867114	HEK293	kidney:	embryo
46	chr10:43867064-43867114	MCF10A-Er-Src	breast:	n/a
47	chr10:43867071-43867121	SKMC	muscle:	n/a
48	chr10:43867071-43867121	GM12878	blood:	n/a
49	chr10:43867071-43867121	NHDF-neo	bronchial:	n/a
50	chr10:43867064-43867114	HepG2	liver:	n/a

Variant related genes	Relation type
FXYD4	TF binding region
FXYD4	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
8	nsv521283	chr10:43866528-43871998	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43866400-43870400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:43867000-43867200	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:43867000-43867200	Enhancers	Hela-S3	cervix
6	chr10:43867000-43867200	Enhancers	K562	blood
7	chr10:43867000-43867400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:43867000-43867400	Enhancers	Placenta	Placenta
9	chr10:43867000-43867400	Enhancers	Stomach Mucosa	stomach
10	chr10:43867000-43868000	Enhancers	Brain Hippocampus Middle	brain
11	chr10:43867000-43868800	Enhancers	Brain Substantia Nigra	brain

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