Variant report

Variant	rs188200979
Chromosome Location	chr1:56279716-56279717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv527396	chr1:56269821-56280909	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56276600-56280200	Enhancers	Hela-S3	cervix
2	chr1:56277400-56280000	Enhancers	NHDF-Ad	bronchial
3	chr1:56277400-56280200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56277600-56279800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:56277600-56279800	Enhancers	Osteobl	bone
6	chr1:56277600-56280000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56277600-56280000	Enhancers	NHLF	lung
8	chr1:56277800-56281000	Weak transcription	Fetal Intestine Large	intestine
9	chr1:56278000-56280000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56278000-56280000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:56278200-56279800	Enhancers	Adipose Nuclei	Adipose
12	chr1:56278200-56280400	Enhancers	Colon Smooth Muscle	Colon
13	chr1:56278400-56280400	Weak transcription	Aorta	Aorta
14	chr1:56278400-56282600	Weak transcription	Fetal Intestine Small	intestine
15	chr1:56278600-56279800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:56278600-56281600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:56278600-56282200	Weak transcription	Pancreas	Pancrea
18	chr1:56278800-56280800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:56279200-56280200	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:56279200-56282600	Enhancers	Liver	Liver
21	chr1:56279400-56279800	Enhancers	HepG2	liver
22	chr1:56279600-56280800	Weak transcription	Lung	lung
23	chr1:56279600-56281400	Weak transcription	Placenta	Placenta
24	chr1:56279600-56281400	Weak transcription	Ovary	ovary
25	chr1:56279600-56282000	Weak transcription	Fetal Stomach	stomach
26	chr1:56279600-56282800	Weak transcription	Right Atrium	heart

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