Variant report

Variant	rs188209466
Chromosome Location	chr15:49754032-49754033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49753086..49754670-chr15:49761846..49764653,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49750400-49754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:49750600-49754600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:49752400-49755000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:49752400-49764000	Weak transcription	HSMM	muscle
5	chr15:49752600-49755400	Enhancers	Fetal Heart	heart
6	chr15:49752600-49755800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:49752600-49758200	Enhancers	NHDF-Ad	bronchial
8	chr15:49752800-49754200	Weak transcription	NHLF	lung
9	chr15:49752800-49757800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:49753000-49756000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:49753200-49754400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:49753200-49754600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:49753200-49758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:49753400-49754200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:49753400-49754600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:49753400-49755000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:49753600-49754200	Enhancers	Adipose Nuclei	Adipose
18	chr15:49753600-49754400	Enhancers	HSMMtube	muscle
19	chr15:49753600-49755000	Enhancers	Fetal Lung	lung
20	chr15:49753600-49756400	Enhancers	Colon Smooth Muscle	Colon
21	chr15:49753800-49754600	Weak transcription	Osteobl	bone
22	chr15:49753800-49756800	Weak transcription	Fetal Kidney	kidney
23	chr15:49753800-49758400	Weak transcription	Hela-S3	cervix
24	chr15:49754000-49754200	Enhancers	Psoas Muscle	Psoas
25	chr15:49754000-49754200	Enhancers	Right Atrium	heart
26	chr15:49754000-49755000	Weak transcription	Fetal Stomach	stomach
27	chr15:49754000-49755600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links