Variant report

Variant	rs1882268
Chromosome Location	chr12:64915795-64915796
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64914513..64916387-chr12:64925086..64927590,2	MCF-7	breast:
2	chr12:64913800..64915930-chr12:65005783..65007721,2	K562	blood:

Variant related genes	Relation type
ENSG00000256199	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1317532	0.83[ASN][1000 genomes]
rs1317533	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1317534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2141765	0.85[EUR][1000 genomes]
rs71467184	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64896600-64916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:64905000-64916000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:64912600-64915800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:64914800-64916800	Enhancers	Fetal Brain Male	brain
6	chr12:64915000-64916800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:64915000-64922400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:64915200-64915800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:64915400-64915800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:64915400-64916200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:64915400-64916200	Enhancers	NHDF-Ad	bronchial
12	chr12:64915400-64916400	Enhancers	GM12878-XiMat	blood
13	chr12:64915400-64916800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:64915400-64916800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:64915400-64916800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr12:64915400-64917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr12:64915400-64917000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:64915400-64917400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:64915600-64916200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr12:64915600-64916600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr12:64915600-64916600	Flanking Active TSS	Dnd41	blood
22	chr12:64915600-64916800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr12:64915600-64916800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:64915600-64917000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr12:64915600-64917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:64915600-64917800	Enhancers	HSMM	muscle
27	chr12:64915600-64918600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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