Variant report

Variant	rs188227444
Chromosome Location	chr4:103541638-103541639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103421697..103423490-chr4:103540373..103542890,2	MCF-7	breast:
2	chr4:103541606..103542158-chr4:104012573..104013396,2	K562	blood:
3	chr4:103541542..103542179-chr4:103953624..103954304,2	MCF-7	breast:
4	chr4:103541561..103542496-chr4:103929971..103930975,6	K562	blood:
5	chr4:103541547..103542382-chr4:103953390..103954339,3	K562	blood:
6	chr4:103534263..103536665-chr4:103540346..103543565,3	K562	blood:
7	chr4:103352382..103353232-chr4:103541499..103542313,2	K562	blood:

Variant related genes	Relation type
ENSG00000260651	Chromatin interaction
ENSG00000109320	Chromatin interaction
ENSG00000138821	Chromatin interaction
ENSG00000248161	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003618	chr4:103530465-103562161	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2498239	chr4:103540653-103541980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3449008	chr4:103541195-103541658	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3350888	chr4:103541304-103545802	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103513000-103542000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:103521400-103554400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:103533400-103541800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:103534000-103546200	Weak transcription	Small Intestine	intestine
5	chr4:103536200-103552800	Weak transcription	Ovary	ovary
6	chr4:103536200-103595400	Weak transcription	Colonic Mucosa	Colon
7	chr4:103536400-103542000	Weak transcription	Fetal Brain Male	brain
8	chr4:103536400-103553400	Weak transcription	Fetal Brain Female	brain
9	chr4:103536600-103541800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:103536600-103541800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:103536600-103542000	Weak transcription	Fetal Kidney	kidney
12	chr4:103536600-103550800	Weak transcription	Thymus	Thymus
13	chr4:103536600-103562600	Weak transcription	Brain Germinal Matrix	brain
14	chr4:103536600-103595800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:103536800-103541800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:103536800-103542000	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:103537800-103544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:103537800-103546200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:103538000-103544800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:103538000-103545600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:103538000-103546600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:103538000-103552800	Weak transcription	Spleen	Spleen
23	chr4:103538200-103541800	Weak transcription	Aorta	Aorta
24	chr4:103538200-103542000	Weak transcription	Left Ventricle	heart
25	chr4:103538200-103542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:103538200-103546200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:103538200-103549400	Weak transcription	Fetal Lung	lung
28	chr4:103538200-103550800	Weak transcription	Lung	lung
29	chr4:103538200-103552400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:103538200-103555600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:103538200-103555600	Weak transcription	Gastric	stomach
32	chr4:103538200-103555800	Weak transcription	Esophagus	oesophagus
33	chr4:103538600-103542000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:103538600-103546600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:103538600-103552800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:103538800-103541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:103538800-103541800	Weak transcription	Brain Anterior Caudate	brain
38	chr4:103538800-103541800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:103538800-103541800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:103538800-103542000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:103538800-103542000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:103538800-103545000	Weak transcription	Fetal Stomach	stomach
43	chr4:103538800-103546000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:103538800-103546200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:103538800-103546200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr4:103538800-103546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:103538800-103546200	Weak transcription	Dnd41	blood
48	chr4:103538800-103546400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:103538800-103546400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:103538800-103546400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links