Variant report

Variant	rs188246821
Chromosome Location	chr3:178568228-178568229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv513095	chr3:178567506-178568713	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3462919	chr3:178567516-178568448	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3462915	chr3:178567545-178568419	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3494560	chr3:178567559-178568415	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3494562	chr3:178567560-178568445	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3462917	chr3:178567573-178568414	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3462916	chr3:178567586-178568373	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv511228	chr3:178567609-178569163	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3462920	chr3:178567639-178568348	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3494561	chr3:178567649-178568347	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv1008439	chr3:178567652-178568342	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	esv1133273	chr3:178567653-178568344	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	esv3462921	chr3:178567653-178568345	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
14	esv3494564	chr3:178567653-178568345	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178562800-178569200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:178566600-178570200	Enhancers	Fetal Lung	lung
3	chr3:178567200-178575000	Weak transcription	Right Ventricle	heart
4	chr3:178567400-178568600	Weak transcription	Fetal Heart	heart
5	chr3:178567400-178568800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:178567600-178569800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:178567800-178568400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:178568000-178578200	Weak transcription	HSMM	muscle
9	chr3:178568200-178568800	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:178568200-178569200	Enhancers	HSMMtube	muscle
11	chr3:178568200-178569800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:178568200-178577400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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