Variant report

Variant	rs188254678
Chromosome Location	chr16:72083389-72083390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv833273	chr16:71971805-72152854	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
7	nsv534588	chr16:72078262-72287230	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
9	nsv906895	chr16:72083318-72106756	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
10	nsv906896	chr16:72083318-72114002	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72059600-72084600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:72060200-72095600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:72060200-72110600	Weak transcription	Esophagus	oesophagus
4	chr16:72076200-72098200	Weak transcription	Fetal Heart	heart
5	chr16:72076600-72084600	Weak transcription	Lung	lung
6	chr16:72076600-72092400	Weak transcription	Left Ventricle	heart
7	chr16:72077000-72107400	Weak transcription	Right Ventricle	heart
8	chr16:72077400-72084000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr16:72077400-72102400	Weak transcription	Brain Substantia Nigra	brain
10	chr16:72077400-72107400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr16:72077600-72084400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr16:72077600-72107400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr16:72078000-72083600	Weak transcription	Primary B cells from cord blood	blood
14	chr16:72078000-72084400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr16:72078000-72090000	Weak transcription	Gastric	stomach
16	chr16:72078000-72100800	Weak transcription	Brain Hippocampus Middle	brain
17	chr16:72078000-72103200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr16:72078200-72095600	Weak transcription	Brain Anterior Caudate	brain
19	chr16:72078200-72105200	Weak transcription	Brain Angular Gyrus	brain
20	chr16:72078400-72084600	Weak transcription	Adipose Nuclei	Adipose
21	chr16:72078400-72098400	Weak transcription	Primary T cells from cord blood	blood
22	chr16:72078400-72105400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:72078400-72108000	Weak transcription	Aorta	Aorta
24	chr16:72079600-72084000	Weak transcription	HepG2	liver
25	chr16:72082800-72084200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr16:72082800-72087800	Enhancers	Primary neutrophils fromperipheralblood	blood

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