Variant report

Variant	rs1882582
Chromosome Location	chr12:83075714-83075715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:83072653..83078667-chr12:83078860..83082223,14	MCF-7	breast:
2	chr12:83069857..83072718-chr12:83073334..83076243,4	MCF-7	breast:
3	chr12:83068566..83070465-chr12:83075258..83077801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179104	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12313503	0.86[AMR][1000 genomes]
rs12425493	0.91[AMR][1000 genomes]
rs12578600	0.91[AMR][1000 genomes]
rs13378007	0.89[AMR][1000 genomes]
rs17009829	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17009863	0.91[AMR][1000 genomes]
rs17009868	0.92[MEX][hapmap];0.91[AMR][1000 genomes]
rs17840860	1.00[GIH][hapmap]
rs1922578	0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs4882520	0.84[MEX][hapmap]
rs4882521	0.86[AMR][1000 genomes]
rs4882522	0.86[AMR][1000 genomes]
rs57227638	0.89[AMR][1000 genomes]
rs57715118	0.83[AMR][1000 genomes]
rs60454381	0.89[AMR][1000 genomes]
rs6539680	0.92[MEX][hapmap];0.86[AMR][1000 genomes]
rs7303441	0.86[AMR][1000 genomes]
rs7306509	0.92[MEX][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes]
rs7311617	0.84[AMR][1000 genomes]
rs7311886	0.86[AMR][1000 genomes]
rs7313780	0.88[AMR][1000 genomes]
rs7315791	0.86[AMR][1000 genomes]
rs74106266	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs74106270	0.89[AMR][1000 genomes]
rs7979455	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv899349	chr12:82931646-83114286	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83067200-83076000	Weak transcription	Brain Substantia Nigra	brain
2	chr12:83071000-83076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:83075400-83076000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:83075600-83076600	Enhancers	Fetal Brain Male	brain
5	chr12:83075600-83076800	Enhancers	Brain Cingulate Gyrus	brain

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