Variant report

Variant	rs1882647
Chromosome Location	chr2:11031699-11031700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11683220	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11695246	0.94[ASN][1000 genomes]
rs1317761	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882648	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2884316	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520545	chr2:11031548-11031788	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11018400-11034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11026200-11034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:11028000-11033200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:11029000-11031800	Enhancers	Fetal Muscle Leg	muscle
5	chr2:11030000-11031800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:11030200-11031800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:11031000-11032000	Enhancers	Right Atrium	heart
8	chr2:11031200-11031800	Enhancers	Fetal Brain Male	brain
9	chr2:11031200-11044800	Weak transcription	Right Ventricle	heart
10	chr2:11031400-11032000	Enhancers	Fetal Brain Female	brain
11	chr2:11031600-11031800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:11031600-11032000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:11031600-11034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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