Variant report

Variant	rs1882663
Chromosome Location	chr12:43002379-43002380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10748333	0.84[EUR][1000 genomes]
rs10785356	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10785358	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10880331	0.82[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs1922756	0.81[AFR][1000 genomes]
rs4590936	0.81[AFR][1000 genomes]
rs4768425	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7296915	0.81[AFR][1000 genomes]
rs7314565	0.81[AFR][1000 genomes]
rs7952819	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7964774	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7980015	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9988993	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832388	chr12:42878328-43087069	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43000600-43002800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:43001400-43005200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:43001600-43004200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:43002000-43002600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:43002000-43003000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:43002000-43003000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:43002200-43002400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:43002200-43003000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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