Variant report

Variant	rs188268859
Chromosome Location	chr6:11556087-11556088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11552654..11554519-chr6:11555824..11557962,2	MCF-7	breast:
2	chr6:11546307..11549072-chr6:11554932..11556756,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv3358459	chr6:11555191-11557739	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3487381	chr6:11555391-11557414	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2514109	chr6:11555484-11557060	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv990232	chr6:11555617-11556524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv9101	chr6:11555803-11556645	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3405465	chr6:11555866-11556914	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv2007122	chr6:11555897-11556606	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3472138	chr6:11555972-11556481	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3487383	chr6:11556002-11556502	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3487388	chr6:11556003-11556518	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3487389	chr6:11556018-11556467	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3487382	chr6:11556024-11556444	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3338023	chr6:11556035-11556689	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3472136	chr6:11556040-11556439	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3487387	chr6:11556043-11556471	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3032	chr6:11556049-11556575	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3487386	chr6:11556050-11556493	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3449255	chr6:11556063-11556441	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3472137	chr6:11556076-11556419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11540600-11566600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11548000-11566600	Weak transcription	Placenta	Placenta
3	chr6:11548200-11565800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11551600-11566600	Weak transcription	Aorta	Aorta
5	chr6:11552800-11566800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:11553000-11556400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:11553200-11556400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:11553200-11556400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:11553200-11556600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:11553200-11556600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:11553200-11556600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:11553200-11565000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:11553400-11556400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:11553400-11556600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:11553400-11565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:11553400-11566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:11553400-11566800	Weak transcription	Gastric	stomach
18	chr6:11553400-11567000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:11553600-11556400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:11556000-11556400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:11556000-11556600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:11556000-11557400	Enhancers	Primary monocytes fromperipheralblood	blood

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