Variant report

Variant	rs1882851
Chromosome Location	chr8:91293849-91293850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10089964	0.81[AMR][1000 genomes]
rs1120635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59299099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7016769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815999	0.81[AMR][1000 genomes]
rs7826865	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91292200-91296400	Weak transcription	K562	blood
2	chr8:91292800-91294400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:91293200-91294200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:91293200-91294200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:91293200-91294400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:91293200-91294600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:91293400-91294200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr8:91293600-91294200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:91293600-91294200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:91293600-91297200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:91293800-91297200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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