Variant report

Variant	rs1882879
Chromosome Location	chr21:16666163-16666164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16570442..16572661-chr21:16665803..16668621,2	MCF-7	breast:
2	chr21:16581111..16587442-chr21:16661859..16666667,10	MCF-7	breast:
3	chr21:16584349..16587030-chr21:16664217..16666665,2	MCF-7	breast:
4	chr21:16436807..16439448-chr21:16663226..16666430,5	MCF-7	breast:
5	chr21:16436105..16438114-chr21:16663913..16667261,4	MCF-7	breast:
6	chr21:16577077..16584288-chr21:16662087..16667374,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236471	Chromatin interaction
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16980928	1.00[GIH][hapmap]
rs62220304	1.00[EUR][1000 genomes]
rs62220306	0.93[EUR][1000 genomes]
rs8129703	0.82[AFR][1000 genomes]
rs9983316	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16662000-16670200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:16662600-16666400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr21:16662800-16666200	Enhancers	Stomach Mucosa	stomach
4	chr21:16663000-16666200	Enhancers	HMEC	breast
5	chr21:16663200-16666200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr21:16663200-16674400	Weak transcription	Psoas Muscle	Psoas
7	chr21:16663400-16676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr21:16663600-16666400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr21:16663600-16666400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr21:16664400-16666200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr21:16664800-16673200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr21:16665000-16667000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr21:16665000-16667000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr21:16665200-16666400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr21:16665200-16666800	Enhancers	HSMM	muscle
16	chr21:16665400-16666200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr21:16665400-16666200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr21:16665400-16666200	Enhancers	HUVEC	blood vessel
19	chr21:16665400-16666400	Enhancers	Osteobl	bone
20	chr21:16665800-16666200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr21:16665800-16666400	Enhancers	NHEK	skin
22	chr21:16665800-16672600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr21:16666000-16667000	Enhancers	A549	lung
24	chr21:16666000-16670200	Weak transcription	Fetal Kidney	kidney
25	chr21:16666000-16670600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr21:16666000-16672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr21:16666000-16673200	Weak transcription	HSMMtube	muscle

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