Variant report

Variant	rs1883198
Chromosome Location	chr22:29451586-29451587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29447905..29449724-chr22:29451027..29452645,2	K562	blood:
2	chr22:29429778..29432047-chr22:29449305..29452097,2	K562	blood:
3	chr22:29447600..29449724-chr22:29451145..29453268,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56089216	1.00[AMR][1000 genomes]
rs57198336	1.00[AMR][1000 genomes]
rs58221763	1.00[AMR][1000 genomes]
rs722590	1.00[AMR][1000 genomes]
rs73882424	1.00[AMR][1000 genomes]
rs73882428	1.00[AMR][1000 genomes]
rs73882440	1.00[AMR][1000 genomes]
rs73882443	1.00[AMR][1000 genomes]
rs73882447	1.00[AMR][1000 genomes]
rs73882449	1.00[AMR][1000 genomes]
rs73882451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29438400-29451800	Strong transcription	Fetal Intestine Small	intestine
2	chr22:29441000-29457000	Weak transcription	HUVEC	blood vessel
3	chr22:29441200-29458000	Weak transcription	HMEC	breast
4	chr22:29443800-29458600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr22:29445400-29454400	Weak transcription	Fetal Lung	lung
6	chr22:29446000-29454800	Weak transcription	K562	blood
7	chr22:29447200-29455000	Weak transcription	Gastric	stomach
8	chr22:29447200-29455800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr22:29447200-29456600	Weak transcription	Placenta	Placenta
10	chr22:29447200-29457600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:29447200-29458200	Weak transcription	Osteobl	bone
12	chr22:29447200-29458600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr22:29447400-29451600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr22:29447400-29452400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr22:29447400-29452800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr22:29447400-29452800	Weak transcription	Fetal Intestine Large	intestine
17	chr22:29447400-29453200	Weak transcription	Fetal Brain Female	brain
18	chr22:29447400-29454400	Weak transcription	Aorta	Aorta
19	chr22:29447400-29454800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr22:29447400-29454800	Weak transcription	Lung	lung
21	chr22:29447400-29455600	Weak transcription	Adipose Nuclei	Adipose
22	chr22:29447400-29455600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr22:29447400-29458200	Weak transcription	NHEK	skin
24	chr22:29447400-29458400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr22:29447600-29452400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr22:29448000-29456400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr22:29449000-29452800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr22:29449200-29452200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr22:29449200-29458400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:29449400-29451800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr22:29449800-29454400	Weak transcription	Fetal Stomach	stomach
32	chr22:29449800-29458200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr22:29450000-29452800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr22:29450000-29452800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr22:29450000-29455800	Enhancers	Fetal Muscle Leg	muscle
36	chr22:29450200-29451600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr22:29450200-29451800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr22:29450400-29451800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr22:29450400-29451800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr22:29450400-29452800	Enhancers	HSMMtube	muscle
41	chr22:29450600-29451600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr22:29450600-29451600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr22:29450600-29453000	Enhancers	Dnd41	blood
44	chr22:29450800-29451800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr22:29450800-29451800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr22:29450800-29452000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr22:29450800-29452800	Enhancers	Fetal Muscle Trunk	muscle
48	chr22:29450800-29454400	Weak transcription	HepG2	liver
49	chr22:29450800-29456200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr22:29450800-29458600	Weak transcription	Pancreas	Pancrea

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