Variant report

Variant	rs1883309
Chromosome Location	chr1:210085870-210085871
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210077721..210079248-chr1:210084762..210086473,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1883310	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67668018	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72649915	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72649918	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4354	chr1:210070574-210100783	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv826498	chr1:210075927-210086136	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3319564	chr1:210076329-210087927	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1821162	chr1:210076345-210086267	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2481942	chr1:210076504-210093838	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3443236	chr1:210076929-210087077	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2524131	chr1:210077023-210086243	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3319562	chr1:210077154-210087302	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3427522	chr1:210077279-210087927	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv436646	chr1:210077323-210085997	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv820382	chr1:210077610-210086136	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1002272	chr1:210077643-210093289	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv9127	chr1:210077814-210086175	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3319561	chr1:210077829-210086477	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv2283783	chr1:210077870-210086164	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3319559	chr1:210077924-210086059	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3505322	chr1:210077945-210086086	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3505321	chr1:210077949-210086063	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3505324	chr1:210077969-210086012	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3319560	chr1:210077980-210086042	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3319565	chr1:210077984-210086048	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3319558	chr1:210077989-210085996	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv9854	chr1:210077993-210085962	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3505323	chr1:210077999-210086019	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv514039	chr1:210078033-210086193	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv498709	chr1:210078055-210085978	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv160131	chr1:210078056-210085971	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3319566	chr1:210078056-210085978	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3505325	chr1:210078056-210085978	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1793238	chr1:210078078-210086539	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1819473	chr1:210078078-210086539	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1844866	chr1:210078078-210108473	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	esv1826158	chr1:210078517-210094763	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv1793329	chr1:210078517-210102950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	esv1825811	chr1:210082206-210135806	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210084800-210086000	Enhancers	HMEC	breast

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