Variant report

Variant	rs188379960
Chromosome Location	chr8:126580322-126580323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126565664..126567400-chr8:126579554..126582844,3	MCF-7	breast:
2	chr8:126579931..126585815-chr8:126586527..126590543,9	MCF-7	breast:
3	chr8:126559583..126561095-chr8:126580080..126582258,2	MCF-7	breast:
4	chr8:126570042..126574536-chr8:126578331..126584724,7	MCF-7	breast:
5	chr8:126442845..126445477-chr8:126580285..126582930,2	MCF-7	breast:
6	chr8:126578692..126581017-chr8:126581136..126583682,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126569800-126588200	Weak transcription	Spleen	Spleen
2	chr8:126572600-126581200	Weak transcription	HMEC	breast
3	chr8:126575400-126580400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:126576200-126581200	Weak transcription	NHDF-Ad	bronchial
5	chr8:126576400-126580400	Weak transcription	Adipose Nuclei	Adipose
6	chr8:126576400-126580400	Weak transcription	Right Atrium	heart
7	chr8:126576400-126581600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:126576400-126581800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:126578800-126582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:126578800-126583800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:126578800-126586600	Weak transcription	Liver	Liver
12	chr8:126579800-126583000	Enhancers	Fetal Lung	lung
13	chr8:126580000-126583000	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:126580200-126580400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:126580200-126580600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:126580200-126580600	Enhancers	Psoas Muscle	Psoas
17	chr8:126580200-126580800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr8:126580200-126581000	Enhancers	Fetal Brain Male	brain
19	chr8:126580200-126581200	Enhancers	Left Ventricle	heart
20	chr8:126580200-126582400	Enhancers	Colon Smooth Muscle	Colon
21	chr8:126580200-126582800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:126580200-126583000	Enhancers	Fetal Muscle Leg	muscle
23	chr8:126580200-126583000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links