Variant report

Variant	rs188396301
Chromosome Location	chr2:33765103-33765104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTBP1-2	chr2:33764718-33765175	NONHSAT070017

Extended variants
information (count: 49 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv433177	chr2:33758456-33765955	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv456130	chr2:33758456-33765955	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv456141	chr2:33758456-33765955	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv581310	chr2:33758456-33765955	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv1825472	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv1828982	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv1828986	chr2:33758456-33772525	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv516338	chr2:33758456-33780231	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv1805241	chr2:33759166-33772478	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1846592	chr2:33761727-33772478	ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1802072	chr2:33762787-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv1805890	chr2:33762787-33767607	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv1821174	chr2:33762787-33768807	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv1801323	chr2:33762787-33772478	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv1845579	chr2:33762787-33772478	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	nsv435723	chr2:33763193-33767856	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1827697	chr2:33764248-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	nsv820684	chr2:33764338-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv3460995	chr2:33764377-33768146	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv3460996	chr2:33764377-33768146	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv1800939	chr2:33764410-33767807	Strong transcription Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv1801101	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv1804331	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv1811876	chr2:33764410-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
25	esv1817625	chr2:33764410-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
26	esv1821195	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
27	esv1826979	chr2:33764410-33767807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
28	esv1832350	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
29	esv1844799	chr2:33764410-33767807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv19946	chr2:33764473-33767693	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv1794563	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
32	esv1795870	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
33	esv1805017	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
34	esv1813146	chr2:33764571-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1821372	chr2:33764571-33767607	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
36	esv1831572	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
37	esv1845673	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
38	esv1847141	chr2:33764571-33768807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
39	esv1843687	chr2:33764571-33769665	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
40	esv1809730	chr2:33764571-33770621	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
41	esv1849967	chr2:33764571-33770621	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
42	esv1817706	chr2:33764571-33772478	Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
43	esv1821368	chr2:33764571-33772478	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
44	esv1825490	chr2:33764647-33766799	Enhancers Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
45	esv1830819	chr2:33764647-33766799	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
46	esv1840107	chr2:33764647-33766799	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
47	esv1841090	chr2:33764647-33766799	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
48	nsv819369	chr2:33764980-33768157	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
49	esv1848756	chr2:33765064-33767807	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33738600-33782800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:33738800-33777200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:33740800-33790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:33747800-33780200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:33748000-33774400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:33748200-33780200	Weak transcription	Brain Angular Gyrus	brain
9	chr2:33755000-33779800	Weak transcription	Small Intestine	intestine
10	chr2:33755200-33767800	Weak transcription	Liver	Liver
11	chr2:33755400-33779800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:33757000-33780000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:33757200-33765400	Weak transcription	Right Atrium	heart
14	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:33757600-33765200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:33759000-33765800	Strong transcription	GM12878-XiMat	blood
17	chr2:33759000-33766600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr2:33760800-33782200	Weak transcription	Brain Substantia Nigra	brain
19	chr2:33760800-33783600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:33761000-33765400	Weak transcription	NHDF-Ad	bronchial
21	chr2:33761000-33789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:33761200-33768200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr2:33761200-33771000	Weak transcription	Right Ventricle	heart
24	chr2:33761200-33774200	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:33761200-33783800	Weak transcription	Psoas Muscle	Psoas
26	chr2:33762000-33765200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:33762000-33780200	Weak transcription	Ovary	ovary
28	chr2:33762200-33772200	Weak transcription	Left Ventricle	heart
29	chr2:33762200-33775800	Weak transcription	Lung	lung
30	chr2:33762200-33777800	Weak transcription	Adipose Nuclei	Adipose
31	chr2:33762200-33779400	Weak transcription	Spleen	Spleen
32	chr2:33762200-33779600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
34	chr2:33762600-33774200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:33763200-33780200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:33763800-33765600	Strong transcription	Brain Hippocampus Middle	brain
37	chr2:33764400-33765800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr2:33764400-33765800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr2:33764800-33765200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:33764800-33766800	Enhancers	Fetal Heart	heart
41	chr2:33764800-33771600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:33765000-33765600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr2:33765000-33768000	Weak transcription	Primary B cells from cord blood	blood

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