Variant report

Variant	rs188406012
Chromosome Location	chr11:10176063-10176064
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv975150	chr11:10174580-10182242	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10162400-10177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10162400-10177800	Weak transcription	NHLF	lung
4	chr11:10166800-10177600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
6	chr11:10173000-10177400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10175600-10176400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:10175800-10176200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:10176000-10176200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:10176000-10176200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:10176000-10176200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:10176000-10176200	Enhancers	Right Ventricle	heart
13	chr11:10176000-10176400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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