Variant report

Variant	rs188416504
Chromosome Location	chr1:168804050-168804051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3364789	chr1:168803428-168805376	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168801600-168804200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:168801800-168806000	Enhancers	Fetal Heart	heart
3	chr1:168802800-168805800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:168803800-168804800	Weak transcription	Small Intestine	intestine
5	chr1:168803800-168805000	Weak transcription	Right Atrium	heart
6	chr1:168803800-168805200	Weak transcription	Pancreas	Pancrea
7	chr1:168803800-168805800	Enhancers	HepG2	liver
8	chr1:168803800-168814600	Weak transcription	Left Ventricle	heart
9	chr1:168804000-168804400	Weak transcription	Fetal Intestine Large	intestine
10	chr1:168804000-168804600	Weak transcription	Fetal Intestine Small	intestine
11	chr1:168804000-168804600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:168804000-168805000	Weak transcription	Fetal Kidney	kidney
13	chr1:168804000-168805000	Weak transcription	Fetal Lung	lung
14	chr1:168804000-168805400	Weak transcription	A549	lung
15	chr1:168804000-168808200	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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