Variant report

Variant	rs188441686
Chromosome Location	chr6:66496346-66496347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:66496031-66496501	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:66496346-66496396	HRE	kidney:	n/a
2	chr6:66496346-66496396	NB4	blood:	n/a
3	chr6:66496346-66496396	PrEC	prostate:	n/a
4	chr6:66496346-66496396	SAEC	small airway:	n/a
5	chr6:66496346-66496396	AG10803	skin:	n/a
6	chr6:66496346-66496396	Caco-2	colon:	n/a
7	chr6:66496346-66496396	Hela-S3	cervix:	n/a
8	chr6:66496346-66496396	PFSK-1	brain:	n/a
9	chr6:66496346-66496396	HAEpiC	amniotic membrane:	n/a
10	chr6:66496346-66496396	HCF	heart:	n/a
11	chr6:66496346-66496396	HUVEC	blood vessel:	n/a
12	chr6:66496346-66496396	SKMC	muscle:	n/a
13	chr6:66496346-66496396	AG04449	skin:	fetal
14	chr6:66496346-66496396	GM06990	blood:	n/a
15	chr6:66496346-66496396	SK-N-MC	brain:	n/a
16	chr6:66496346-66496396	Jurkat	blood:	n/a
17	chr6:66496346-66496396	GM19239	blood:	n/a
18	chr6:66496346-66496396	MCF-7	breast:	n/a
19	chr6:66496346-66496396	Hepatocyte	liver:	n/a
20	chr6:66496346-66496396	ECC-1	luminal epithelium:	n/a
21	chr6:66496346-66496396	HNPCEpiC	eye:	n/a
22	chr6:66496346-66496396	HEK293	kidney:	embryo
23	chr6:66496346-66496396	PANC-1	pancreas:	n/a
24	chr6:66496346-66496396	AG09309	skin:	n/a
25	chr6:66496346-66496396	MCF10A-Er-Src	breast:	n/a
26	chr6:66496346-66496396	HL-60	blood:	n/a
27	chr6:66496346-66496396	AG04450	lung:	fetal
28	chr6:66496346-66496396	HIPEpiC	eye:	n/a
29	chr6:66496346-66496396	GM12878	blood:	n/a
30	chr6:66496346-66496396	HCM	heart:	n/a
31	chr6:66496346-66496396	NT2-D1	testis:	n/a
32	chr6:66496346-66496396	IMR90	lung:	fetal
33	chr6:66496346-66496396	HRPEpiC	eye:	n/a
34	chr6:66496346-66496396	HCT-116	colon:	n/a
35	chr6:66496346-66496396	H1-hESC	embryonic stem cell:	embryo
36	chr6:66496346-66496396	ovcar-3	ovarian:	n/a
37	chr6:66496346-66496396	K562	blood:	n/a
38	chr6:66496346-66496396	HRCEpiC	kidney:	n/a
39	chr6:66496346-66496396	AoSMC	blood vessel:	n/a
40	chr6:66496346-66496396	SK-N-SH_RA	brain:	n/a
41	chr6:66496346-66496396	HMEC	breast:	n/a
42	chr6:66496346-66496396	HPAEpiC	pulmonary alveolar:	n/a
43	chr6:66496346-66496396	AG09319	gingival:	n/a
44	chr6:66496346-66496396	ProgFib	skin:	n/a
45	chr6:66496346-66496396	A549	lung:	n/a
46	chr6:66496346-66496396	T-47D	breast:	n/a
47	chr6:66496346-66496396	HCPEpiC	choroid plexus:	n/a
48	chr6:66496346-66496396	GM12892	blood:	n/a
49	chr6:66496346-66496396	NHBE	bronchial:	n/a
50	chr6:66496346-66496396	HEEpiC	esophagus:	n/a

No data

Variant related genes	Relation type
SLC25A51P1	TF binding region
SLC25A51P1	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886032	chr6:66278575-66622346	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020458	chr6:66391779-66508300	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1024973	chr6:66393348-66503431	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020246	chr6:66413907-66536897	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538286	chr6:66413907-66536897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886033	chr6:66420678-66506140	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv886034	chr6:66450739-66622346	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886035	chr6:66482647-66571498	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv886036	chr6:66482647-66598249	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv462990	chr6:66491056-66598938	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv603472	chr6:66491056-66598938	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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