Variant report

Variant	rs188479924
Chromosome Location	chr3:18017970-18017971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18009800-18019000	Weak transcription	Fetal Thymus	thymus
2	chr3:18014000-18021600	Enhancers	Dnd41	blood
3	chr3:18014400-18021400	Weak transcription	Thymus	Thymus
4	chr3:18014600-18019800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:18015200-18020200	Weak transcription	Fetal Stomach	stomach
6	chr3:18015400-18022600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:18015600-18021000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:18015800-18018200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:18016800-18018400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:18016800-18022000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:18017200-18021000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:18017200-18021800	Enhancers	Colon Smooth Muscle	Colon
13	chr3:18017400-18018400	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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