Variant report

Variant	rs1884807
Chromosome Location	chr14:69148298-69148299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69142992..69145635-chr14:69147389..69151397,3	MCF-7	breast:
2	chr14:69134172..69139010-chr14:69141375..69149578,10	MCF-7	breast:
3	chr14:69134535..69137346-chr14:69145752..69148446,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10483820	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1884808	0.82[ASN][1000 genomes]
rs2145149	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902630	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56144448	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7145032	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1884807	SLC10A1	cis	cerebellum	SCAN
rs1884807	C14orf162	cis	parietal	SCAN

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69136800-69150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69137800-69148400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69139200-69150000	Weak transcription	Thymus	Thymus
4	chr14:69141400-69153800	Enhancers	Fetal Intestine Large	intestine
5	chr14:69141400-69156800	Enhancers	Placenta	Placenta
6	chr14:69142200-69150000	Weak transcription	Aorta	Aorta
7	chr14:69144400-69148600	Enhancers	Pancreas	Pancrea
8	chr14:69144800-69152400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69145200-69148600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:69145400-69149400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:69145400-69152000	Weak transcription	Gastric	stomach
12	chr14:69145400-69152600	Enhancers	Fetal Kidney	kidney
13	chr14:69145600-69148400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:69145600-69153200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:69146000-69149000	Enhancers	Hela-S3	cervix
16	chr14:69146200-69149000	Enhancers	HSMMtube	muscle
17	chr14:69146200-69152600	Enhancers	Fetal Lung	lung
18	chr14:69146200-69153000	Enhancers	Fetal Muscle Leg	muscle
19	chr14:69146200-69155400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:69146400-69148600	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr14:69146400-69152800	Enhancers	Adipose Nuclei	Adipose
22	chr14:69146400-69153200	Enhancers	NHDF-Ad	bronchial
23	chr14:69146600-69148400	Weak transcription	A549	lung
24	chr14:69146600-69150200	Enhancers	HepG2	liver
25	chr14:69146600-69157400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:69146800-69148800	Enhancers	Primary B cells from cord blood	blood
27	chr14:69146800-69149800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr14:69146800-69151400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:69146800-69152800	Enhancers	Fetal Stomach	stomach
30	chr14:69147000-69152000	Enhancers	NHEK	skin
31	chr14:69147000-69153200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:69147000-69157400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69147200-69148600	Enhancers	Ovary	ovary
34	chr14:69147200-69149400	Enhancers	Liver	Liver
35	chr14:69147200-69151400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr14:69147200-69152200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr14:69147200-69153000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:69147200-69153000	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:69147200-69153200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:69147200-69153200	Enhancers	NHLF	lung
41	chr14:69147200-69153200	Enhancers	Osteobl	bone
42	chr14:69147200-69157600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:69147400-69148800	Enhancers	Fetal Heart	heart
44	chr14:69147400-69148800	Enhancers	Right Atrium	heart
45	chr14:69147400-69148800	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr14:69147400-69148800	Enhancers	HSMM	muscle
47	chr14:69147400-69149000	Weak transcription	K562	blood
48	chr14:69147400-69149200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr14:69147400-69149600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr14:69147400-69150400	Enhancers	Primary T helper cells PMA-I stimulated	--

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